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The map label for this gene is ybiS [H]

Identifier: 110632721

GI number: 110632721

Start: 402694

End: 403494

Strand: Direct

Name: ybiS [H]

Synonym: Meso_0360

Alternate gene names: 110632721

Gene position: 402694-403494 (Clockwise)

Preceding gene: 110632711

Following gene: 110632727

Centisome position: 9.13

GC content: 63.42

Gene sequence:

>801_bases
ATGAAGTTCGTTCTGTATGTAGCCGGACTTGCCGCCATTTTTCTTCTTCCCAATGGCGCCGATGCTCAGACCCGTTACGC
TGAGCCACCTCCCGTCCTTGTCAGTCCTGACCTTTCCGCACCCTGGGTGATGCAGCTTCGCAATCCGCCGGCACGAGCGA
GGCCTGCCGAAAGGCAGCGTCAGGTCTACCGGGTTCCGCCCTATCCGCGGGAACTTCGGTCCAGCGCACGGCAGGCCGAG
CGCCGGTATGTGCTGCGCCCGCAGCCTCATCATCAGCCCCGAGCGCGGGCGGTCCGCACGGCTGCTGCGGCCGCAGCACC
AAGGGCGGTGCGGCCGGATGAGATGGATCCGAAATTCCTGCCCCAGGAAGTCCGGTATGATGGTCCGCAAGCGCCGGGCA
CCATCGTGGTCGATACCAAGGAGCGCTTCCTTTACCTCGTGCTGAAGGACGGTCAGGCGCGGCGCTATGGCGTCGGTGTC
GGTAAGGACGGTTTCGGCTGGACGGGCACTCATAAGGTCACAGCCAAGCGCGAGTGGCCCGATTGGCGCCCGCCCGCGGA
AATGATCGCCCGGGAAAGGAAAAATGGGAAAATCTTGCCGACCCTCGTCAAGGGCGGCCCGCAAAACCCGCTCGGTGCCC
GCGCGCTGTATCTCGGCTCGACGCTCTACCGCATACACGGCACCAACGCGCCGTGGACGATTGGCCAGGCCGTCTCGTCG
GGCTGCATCCGGATGCGCAACGAAGATGTGATAGATTTGTATGAACGTGTTTCCGTCGGCACCAAGGTCGTGGTAATCTG
A

Upstream 100 bases:

>100_bases
CTGCAGCATCCTGACAGGAACCGCCTCAAAGCGTTTGAACAGCCGCCATATCTGGCGGGAGTGACAGCAAGCAATCTGAT
GACCAGGTGAGAAAGGGCCG

Downstream 100 bases:

>100_bases
TTCTCAGATGCGGGGGACGAGCCGGCCGGAGGGGTCTTGCCGGTATTGTCTTCGAAAAGGCAGCGCTTCAGCGATGAAGC
GCTGCTTTTTTATGCGGCCA

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKFVLYVAGLAAIFLLPNGADAQTRYAEPPPVLVSPDLSAPWVMQLRNPPARARPAERQRQVYRVPPYPRELRSSARQAE
RRYVLRPQPHHQPRARAVRTAAAAAAPRAVRPDEMDPKFLPQEVRYDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGV
GKDGFGWTGTHKVTAKREWPDWRPPAEMIARERKNGKILPTLVKGGPQNPLGARALYLGSTLYRIHGTNAPWTIGQAVSS
GCIRMRNEDVIDLYERVSVGTKVVVI

Sequences:

>Translated_266_residues
MKFVLYVAGLAAIFLLPNGADAQTRYAEPPPVLVSPDLSAPWVMQLRNPPARARPAERQRQVYRVPPYPRELRSSARQAE
RRYVLRPQPHHQPRARAVRTAAAAAAPRAVRPDEMDPKFLPQEVRYDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGV
GKDGFGWTGTHKVTAKREWPDWRPPAEMIARERKNGKILPTLVKGGPQNPLGARALYLGSTLYRIHGTNAPWTIGQAVSS
GCIRMRNEDVIDLYERVSVGTKVVVI
>Mature_266_residues
MKFVLYVAGLAAIFLLPNGADAQTRYAEPPPVLVSPDLSAPWVMQLRNPPARARPAERQRQVYRVPPYPRELRSSARQAE
RRYVLRPQPHHQPRARAVRTAAAAAAPRAVRPDEMDPKFLPQEVRYDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGV
GKDGFGWTGTHKVTAKREWPDWRPPAEMIARERKNGKILPTLVKGGPQNPLGARALYLGSTLYRIHGTNAPWTIGQAVSS
GCIRMRNEDVIDLYERVSVGTKVVVI

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=137, Percent_Identity=45.985401459854, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=41.6058394160584, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787356, Length=145, Percent_Identity=37.2413793103448, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787968, Length=143, Percent_Identity=39.8601398601399, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 29740; Mature: 29740

Theoretical pI: Translated: 10.96; Mature: 10.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVLYVAGLAAIFLLPNGADAQTRYAEPPPVLVSPDLSAPWVMQLRNPPARARPAERQR
CEEEEEEHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHC
QVYRVPPYPRELRSSARQAERRYVLRPQPHHQPRARAVRTAAAAAAPRAVRPDEMDPKFL
CEEECCCCHHHHHHHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PQEVRYDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGVGKDGFGWTGTHKVTAKREWP
CHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCCCEEEEECCCCC
DWRPPAEMIARERKNGKILPTLVKGGPQNPLGARALYLGSTLYRIHGTNAPWTIGQAVSS
CCCCHHHHHHHHHCCCCEEEHEECCCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHH
GCIRMRNEDVIDLYERVSVGTKVVVI
HHEEECCCCHHHHHHHHCCCEEEEEC
>Mature Secondary Structure
MKFVLYVAGLAAIFLLPNGADAQTRYAEPPPVLVSPDLSAPWVMQLRNPPARARPAERQR
CEEEEEEHHHHHEEECCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCCCHHHC
QVYRVPPYPRELRSSARQAERRYVLRPQPHHQPRARAVRTAAAAAAPRAVRPDEMDPKFL
CEEECCCCHHHHHHHHHHHHHCEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PQEVRYDGPQAPGTIVVDTKERFLYLVLKDGQARRYGVGVGKDGFGWTGTHKVTAKREWP
CHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEECCCCCCCCCCCCCEEEEECCCCC
DWRPPAEMIARERKNGKILPTLVKGGPQNPLGARALYLGSTLYRIHGTNAPWTIGQAVSS
CCCCHHHHHHHHHCCCCEEEHEECCCCCCCCCCEEEEECCEEEEEECCCCCCHHHHHHHH
GCIRMRNEDVIDLYERVSVGTKVVVI
HHEEECCCCHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]