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The map label for this gene is ydjX [C]

Identifier: 110632714

GI number: 110632714

Start: 395645

End: 396400

Strand: Reverse

Name: ydjX [C]

Synonym: Meso_0353

Alternate gene names: 110632714

Gene position: 396400-395645 (Counterclockwise)

Preceding gene: 110632715

Following gene: 110632713

Centisome position: 8.98

GC content: 60.85

Gene sequence:

>756_bases
ATGCCGTGGCGCTTCGTGCCTCTCGGGCTTATCGTCCTGGTACTCGCGGTTGGCTATGCTCTTGGCTGGCATGAACATCT
GAGCTTTCATGCGCTTCTGGAAAGCCGCGCGGCGATCAAGATGAGGATCGAAGCGCATCCCATTCTATCGTCTGCCAGCT
TCACCCTTGCCTATGCGATCGCCGCCGCCGTCGCTCTTCCGGCCGCTGCGTTGCTGACGATGGCCGCGGGGTTCCTCTTC
GGGTGGCTCTTGGGCGGCACACTGGTGCTGATCGGCGCCACCCTGGGAGCCACCATTCTGTTCCTCGCAGCCCGCACGGC
CTTCGGCGGGCTGCTTCGCAAATATGCGGGAGGACGGGCAGCGCAATTCGCCAAGGGCTTCGAGGAAGACGCGTTCGGCT
ATCTTCTCGTGCTGCGGCTAGCCCCGATTTTTCCGTTCTGGCTGGTCAATATCGTCCCGGCCTTTTTTCAGGTTCGCTTG
AGCACCTTCGTCGGCGCCACCATGCTCGGCATCATTCCTGCCACTTACGCCTATGCCTATCTGGGCCAAGGGCTCGAAAG
CATTCTGATTGCCGCGTCCGCAGCCGGGGAGAAGATCGAATTGCATGATCTCGTTACGAGGGAACTTACCCTGTCCCTCG
GCGGGCTTGCGGTGGTCGCAGCCCTTGCGGTCGTCGTAAAACGAAGGTTGAAAAGCAAGGCCACCGGGAGGGGCGAAGTG
CCAATGGCGGGAAATGACCACCATCCTCAAACCTGA

Upstream 100 bases:

>100_bases
TGATTCAGGCGAAAGCGGATTGCCGCTTTGAAGCGAAAAGGCCATTTACAGCCGGAACCATCATGAGTTTTGCTTGGCTG
GATGCCTGGGAGGAAGCTGA

Downstream 100 bases:

>100_bases
CATTTGCGTGATCGGCGCAGGCTCGGGCGGATTGACCGTCGCGGCCGCGGCAGCGTCCCTTGGTGCTTCCGTCGTTCTTA
TCGAGCGGGGGAAGATGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPWRFVPLGLIVLVLAVGYALGWHEHLSFHALLESRAAIKMRIEAHPILSSASFTLAYAIAAAVALPAAALLTMAAGFLF
GWLLGGTLVLIGATLGATILFLAARTAFGGLLRKYAGGRAAQFAKGFEEDAFGYLLVLRLAPIFPFWLVNIVPAFFQVRL
STFVGATMLGIIPATYAYAYLGQGLESILIAASAAGEKIELHDLVTRELTLSLGGLAVVAALAVVVKRRLKSKATGRGEV
PMAGNDHHPQT

Sequences:

>Translated_251_residues
MPWRFVPLGLIVLVLAVGYALGWHEHLSFHALLESRAAIKMRIEAHPILSSASFTLAYAIAAAVALPAAALLTMAAGFLF
GWLLGGTLVLIGATLGATILFLAARTAFGGLLRKYAGGRAAQFAKGFEEDAFGYLLVLRLAPIFPFWLVNIVPAFFQVRL
STFVGATMLGIIPATYAYAYLGQGLESILIAASAAGEKIELHDLVTRELTLSLGGLAVVAALAVVVKRRLKSKATGRGEV
PMAGNDHHPQT
>Mature_250_residues
PWRFVPLGLIVLVLAVGYALGWHEHLSFHALLESRAAIKMRIEAHPILSSASFTLAYAIAAAVALPAAALLTMAAGFLFG
WLLGGTLVLIGATLGATILFLAARTAFGGLLRKYAGGRAAQFAKGFEEDAFGYLLVLRLAPIFPFWLVNIVPAFFQVRLS
TFVGATMLGIIPATYAYAYLGQGLESILIAASAAGEKIELHDLVTRELTLSLGGLAVVAALAVVVKRRLKSKATGRGEVP
MAGNDHHPQT

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI66392190, Length=180, Percent_Identity=25.5555555555556, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17532687, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 26596; Mature: 26465

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWRFVPLGLIVLVLAVGYALGWHEHLSFHALLESRAAIKMRIEAHPILSSASFTLAYAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHH
AAAVALPAAALLTMAAGFLFGWLLGGTLVLIGATLGATILFLAARTAFGGLLRKYAGGRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AQFAKGFEEDAFGYLLVLRLAPIFPFWLVNIVPAFFQVRLSTFVGATMLGIIPATYAYAY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGQGLESILIAASAAGEKIELHDLVTRELTLSLGGLAVVAALAVVVKRRLKSKATGRGEV
HHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PMAGNDHHPQT
CCCCCCCCCCC
>Mature Secondary Structure 
PWRFVPLGLIVLVLAVGYALGWHEHLSFHALLESRAAIKMRIEAHPILSSASFTLAYAI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHH
AAAVALPAAALLTMAAGFLFGWLLGGTLVLIGATLGATILFLAARTAFGGLLRKYAGGRA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
AQFAKGFEEDAFGYLLVLRLAPIFPFWLVNIVPAFFQVRLSTFVGATMLGIIPATYAYAY
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGQGLESILIAASAAGEKIELHDLVTRELTLSLGGLAVVAALAVVVKRRLKSKATGRGEV
HHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PMAGNDHHPQT
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]