Click here to switch to the map view.

The map label for this gene is fliC [H]

Identifier: 110632649

GI number: 110632649

Start: 326984

End: 327853

Strand: Reverse

Name: fliC [H]

Synonym: Meso_0288

Alternate gene names: 110632649

Gene position: 327853-326984 (Counterclockwise)

Preceding gene: 110632650

Following gene: 110632648

Centisome position: 7.43

GC content: 60.34

Gene sequence:

>870_bases
ATGGCTAGCATTAATACGAACGCGTCGGCGATGACGGCGCTGCAGACCCTCAACACCATTTCCAAGAACATGGCCACCAC
GCAGTCGCGCATCTCTACCGGCTTGCGCGTGGCCGAAGCTTCTGACAACGCCGCTTACTGGTCCATCGCGACCTCGATGA
AGTCGGACAACAAGGCGCTTTCCAGCGTACAGGACGCGCTGGGTCTAGGCGCCGGCAAGCTGGACACGGCCTATACGGGC
ATCAACGAGGTGATCGGCACGGTCGACAAGATCAAGCAGAAGCTGGTGAGCGCGCGTGGCGCCAGCCAGGAAGACCAGCA
GAAGATCCAGACCGAGATCGAAGCTCTCCAGGAACACATCACTTCGGTTGTCGGCAACTCGAACTATGCGGGTTCCAACA
TCCTGCAAGACGGTACCGATGTAAACATCGTCTCCTCGTATAACCGCACGGGCGCGACAGTTGCCATCGATGAGATCACG
ATCACCGGCTCTTCCGCACAAGTGCTGAGTGACGACGCGTCGGCGGGCATTGTTTCGGGGATTGTCGCCAGCACGTTCTT
CGACGCTTCGGGAGCGGCTATTGACGATACGGCGATCGATACCGCGCTTGGAACCGTCGAAACCGCGCTCGCCTCTCTCG
CAGAGCAGGCGTCGGTGCTGGGTGCCGCCAAGTCGCGCGTAGACCTGCAGAAGGATTTCGTGTCCAAGCTGTCGGATGCG
ATCGACCGCGGTGTCGGCCAGCTGGTTGACGCTGACATGAACGAGGAATCGGCTCGTCTTTCGGCGCTCCAGGTCCAGCA
GCAGCTTGGCGTGCAGGCGCTCTCGATCGCCAACCAGAACACGCAGGGCATTCTCTCGCTGTTCCGCTGA

Upstream 100 bases:

>100_bases
GAGTGAGTTCGCGTCAGGACTCACGGCATGAGGCCTCTCCGTCATTGCCGGTAATGCCCGGTATGTCCCTCGTCAGTTTT
GTTTAAGGGGCGTTTTTCCC

Downstream 100 bases:

>100_bases
TCGGCCGAACAGAAGAGACCTGAAAGCCGAAGGGCCGCCTTTGAGGCGGCCCTTTTTTTGTTGCGGTTTCAGGTTAAGCA
ATCGTTAACCATAAACTTGT

Product: flagellin-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MASINTNASAMTALQTLNTISKNMATTQSRISTGLRVAEASDNAAYWSIATSMKSDNKALSSVQDALGLGAGKLDTAYTG
INEVIGTVDKIKQKLVSARGASQEDQQKIQTEIEALQEHITSVVGNSNYAGSNILQDGTDVNIVSSYNRTGATVAIDEIT
ITGSSAQVLSDDASAGIVSGIVASTFFDASGAAIDDTAIDTALGTVETALASLAEQASVLGAAKSRVDLQKDFVSKLSDA
IDRGVGQLVDADMNEESARLSALQVQQQLGVQALSIANQNTQGILSLFR

Sequences:

>Translated_289_residues
MASINTNASAMTALQTLNTISKNMATTQSRISTGLRVAEASDNAAYWSIATSMKSDNKALSSVQDALGLGAGKLDTAYTG
INEVIGTVDKIKQKLVSARGASQEDQQKIQTEIEALQEHITSVVGNSNYAGSNILQDGTDVNIVSSYNRTGATVAIDEIT
ITGSSAQVLSDDASAGIVSGIVASTFFDASGAAIDDTAIDTALGTVETALASLAEQASVLGAAKSRVDLQKDFVSKLSDA
IDRGVGQLVDADMNEESARLSALQVQQQLGVQALSIANQNTQGILSLFR
>Mature_288_residues
ASINTNASAMTALQTLNTISKNMATTQSRISTGLRVAEASDNAAYWSIATSMKSDNKALSSVQDALGLGAGKLDTAYTGI
NEVIGTVDKIKQKLVSARGASQEDQQKIQTEIEALQEHITSVVGNSNYAGSNILQDGTDVNIVSSYNRTGATVAIDEITI
TGSSAQVLSDDASAGIVSGIVASTFFDASGAAIDDTAIDTALGTVETALASLAEQASVLGAAKSRVDLQKDFVSKLSDAI
DRGVGQLVDADMNEESARLSALQVQQQLGVQALSIANQNTQGILSLFR

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. The flagellum is required to cause a persistent disease in a murine model of infection [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

None

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 29924; Mature: 29793

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASINTNASAMTALQTLNTISKNMATTQSRISTGLRVAEASDNAAYWSIATSMKSDNKAL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHHHHHCCCHHHH
SSVQDALGLGAGKLDTAYTGINEVIGTVDKIKQKLVSARGASQEDQQKIQTEIEALQEHI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TSVVGNSNYAGSNILQDGTDVNIVSSYNRTGATVAIDEITITGSSAQVLSDDASAGIVSG
HHHHCCCCCCCCCHHCCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHCCCCHHHHHHH
IVASTFFDASGAAIDDTAIDTALGTVETALASLAEQASVLGAAKSRVDLQKDFVSKLSDA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDRGVGQLVDADMNEESARLSALQVQQQLGVQALSIANQNTQGILSLFR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHCC
>Mature Secondary Structure 
ASINTNASAMTALQTLNTISKNMATTQSRISTGLRVAEASDNAAYWSIATSMKSDNKAL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEHHHHHHCCCHHHH
SSVQDALGLGAGKLDTAYTGINEVIGTVDKIKQKLVSARGASQEDQQKIQTEIEALQEHI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
TSVVGNSNYAGSNILQDGTDVNIVSSYNRTGATVAIDEITITGSSAQVLSDDASAGIVSG
HHHHCCCCCCCCCHHCCCCCEEEEECCCCCCCEEEEEEEEEECCCHHHHCCCCHHHHHHH
IVASTFFDASGAAIDDTAIDTALGTVETALASLAEQASVLGAAKSRVDLQKDFVSKLSDA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDRGVGQLVDADMNEESARLSALQVQQQLGVQALSIANQNTQGILSLFR
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]