| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is pbpC [H]
Identifier: 110632619
GI number: 110632619
Start: 292188
End: 294287
Strand: Reverse
Name: pbpC [H]
Synonym: Meso_0258
Alternate gene names: 110632619
Gene position: 294287-292188 (Counterclockwise)
Preceding gene: 110632620
Following gene: 110632614
Centisome position: 6.67
GC content: 65.9
Gene sequence:
>2100_bases ATGTTGATGAAATCAACTTGGCGGGTATGGGCAAGGCGGGCAGGCATTACTGCTGCCGTTATGACCGCGGCCACGATCGC CGGCGCCTTCACCCTCCATCACCTCGATCAAGCCTATCCGCCCCCGCTTGAAAACACCGGCGCGCTTTCACAGGAAGTGG TGGACCGGAAAGGAGCGCTCTTGCGTGTCTATGCAGCGCCCGATGGGCGCTGGCGGCTGAAGGCGGAGATCGAACAGCTC GACCCGCAATTCATCAAGATGCTGGTCGCCTATGAGGACCGGCGCTTCTGGTCGCATTCCGGCGTTGATCCAATCGCCCT TGCTCGCGCGGCCATGCAGCTGGTGCTCAACGGCCGCGTCGTCTCCGGTGGCTCCACATTATCCATGCAGCTTGCACGGC TGATCGAGCCGCGGGAGGAGCGCAGCTTTTCAGCAAAATTCCGCCAGATCGCCCGAGCGCTACAGATCGAGTGGCGACTG TCAAAACGCGAGATCCTGAACCGCTATCTGACGCTCGCGCCCTATGGGGGCAACCTGGAGGGCGTGCGCGCCGCGAGCCT TGCCTGGTTTGGCAAGGAGCCGCAGAAACTCACACTTTCCGAGGCTGCCCTGCTTGTCGCCCTGCCGCAATCGCCCGAGG CGCGGCGGCCCGACCGCCATCCAGATACCGCGAAATCGGCGCGCGACCGGGTGCTGGCCCGCATGGCCAAGGCCGGCATT ATTGCCGAGGGAGAGGTGGAGCGCGCCTCGCGCGGGAAGGTGGCGGCGCAGCGCCTGCCCATGCCCGCCTTTGCCGCGCA TCTTGCCGACACCGTGATCCGTGCAACACCCGGGGAGCTGCGCCGGCCGCTGCTGCTTGACCGCGGTGTGCAGGCCGCGC TGGAGGAAGTGGCGCGTGAAGGCGCGCGGCGGCTCGGCCGCAAGGTGTCAGTGGCGATGGTCATGGCCGACGCCCGAACG GGCGACGTGCTCGCGCGCGTCGGATCGGCCGGTTATTTCGATTCAAGCCGGGCAGGCTGGATCGATATGAGCGTGGCCGA GCGGTCCCCCGGCTCGACGCTAAAGCCTTTTATCTACGCGCTTGCGATCGAAGACGGCCTCGTCATGCAGGAGACGATGA TCGAGGACCGCCCAGGCAATTTCCACGGCTACCGCCCGCGCAATTTCGACATGGAGTATCAGGGCGATGTCACGGTCCGG CAGGCATTGCAGATGTCGCTCAATGTGCCGGCGATCCGGCTGCTTGATGCGGTTGGCACCGCCCGGCTTATCTCCCGGCT CAAGCGCGCCGGCGTGCAACTTGCGCTTCCAAAGGGGCAGGCGCCGGGGCTCGCCATCGGACTTGGAGGCGCAGGGCTGA CGCTCGAGAAGCTGGTGCAAGCCTACACCGCGCTTGCCAATCGCGGCGAGGCCAGGATGCTGCGCTATTCGACCGAGGAC GAAGAGACGGCCTCTACGGAGGTGCTGACACCAGCGGCCGCCTGGCAGATTGCCGATATGCTCTCGGGCGTGGTCCCGCC GCAAGGCGCGCCGCGCCTCGGCATCGCCTATAAGACCGGCACCTCCTACGGCTATCGCGACGCCTGGGCGGTGGGTTACG ATGGCCGACACGTGCTGGGCGTGTGGGTTGGAAGGCCGGACGGAGGATCGGTGCCGGGTCTTACCGGCTATCTTGCCGCG GCGCCGATCCTGTTTGAAGCTTTCTCCCGCTCCGGTGTCGGGATTACGCCGTTTCCGCCCCGGCCTGCAGGGGCGGTACG GCTTACCGCGGCAGAATTGCCGATGCCGCTTCGCCGGTTCTCCTCCACGTTTTCAGCGGCGCAGACGGGAGCCCCCACGG AACCCGCACCGGAAATCGTCTTTCCGCCAGAAGGCGCACGCATCGATGTCGGTCTTTCCGAGAACCGCAATGCGGGAATC CTTGCCCTCAAAATCATTGGAGGGCGGGCGCCGTTCAGGTGGCTTGCCAATGGCAAGCCGCTTGCGGAAACCTTTCGCCG GCGCACCGCCTCATGGGCGCCTGATGGGGGCGGCGCTTCCACGCTCACCGTCATCGACGCGGCAGGGCGCACCGCCAGCG TCAGCGTTTTCCTGGAGTAG
Upstream 100 bases:
>100_bases AGCAATCTCCCCCCTTGAGGGGGAGATGCCCGGCAGGGCAGAGGGGGGTGCGGAAGGACGCCAACGTCTTTAACCCGGTC CAAAGCGCTCCGTGGCCGCC
Downstream 100 bases:
>100_bases CAGCTCCGGTCAGCCTGCAGTGGCCGAGGTCTCGTAAAGCCTTGACTCTGTTTCCGCGTCCACGCCCGCAAGGCTTACAT TATAGCCCCAGAGGCGGCAG
Product: penicillin-binding protein 1C
Products: NA
Alternate protein names: PBP-1c; PBP1c; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Transpeptidase-like module [H]
Number of amino acids: Translated: 699; Mature: 699
Protein sequence:
>699_residues MLMKSTWRVWARRAGITAAVMTAATIAGAFTLHHLDQAYPPPLENTGALSQEVVDRKGALLRVYAAPDGRWRLKAEIEQL DPQFIKMLVAYEDRRFWSHSGVDPIALARAAMQLVLNGRVVSGGSTLSMQLARLIEPREERSFSAKFRQIARALQIEWRL SKREILNRYLTLAPYGGNLEGVRAASLAWFGKEPQKLTLSEAALLVALPQSPEARRPDRHPDTAKSARDRVLARMAKAGI IAEGEVERASRGKVAAQRLPMPAFAAHLADTVIRATPGELRRPLLLDRGVQAALEEVAREGARRLGRKVSVAMVMADART GDVLARVGSAGYFDSSRAGWIDMSVAERSPGSTLKPFIYALAIEDGLVMQETMIEDRPGNFHGYRPRNFDMEYQGDVTVR QALQMSLNVPAIRLLDAVGTARLISRLKRAGVQLALPKGQAPGLAIGLGGAGLTLEKLVQAYTALANRGEARMLRYSTED EETASTEVLTPAAAWQIADMLSGVVPPQGAPRLGIAYKTGTSYGYRDAWAVGYDGRHVLGVWVGRPDGGSVPGLTGYLAA APILFEAFSRSGVGITPFPPRPAGAVRLTAAELPMPLRRFSSTFSAAQTGAPTEPAPEIVFPPEGARIDVGLSENRNAGI LALKIIGGRAPFRWLANGKPLAETFRRRTASWAPDGGGASTLTVIDAAGRTASVSVFLE
Sequences:
>Translated_699_residues MLMKSTWRVWARRAGITAAVMTAATIAGAFTLHHLDQAYPPPLENTGALSQEVVDRKGALLRVYAAPDGRWRLKAEIEQL DPQFIKMLVAYEDRRFWSHSGVDPIALARAAMQLVLNGRVVSGGSTLSMQLARLIEPREERSFSAKFRQIARALQIEWRL SKREILNRYLTLAPYGGNLEGVRAASLAWFGKEPQKLTLSEAALLVALPQSPEARRPDRHPDTAKSARDRVLARMAKAGI IAEGEVERASRGKVAAQRLPMPAFAAHLADTVIRATPGELRRPLLLDRGVQAALEEVAREGARRLGRKVSVAMVMADART GDVLARVGSAGYFDSSRAGWIDMSVAERSPGSTLKPFIYALAIEDGLVMQETMIEDRPGNFHGYRPRNFDMEYQGDVTVR QALQMSLNVPAIRLLDAVGTARLISRLKRAGVQLALPKGQAPGLAIGLGGAGLTLEKLVQAYTALANRGEARMLRYSTED EETASTEVLTPAAAWQIADMLSGVVPPQGAPRLGIAYKTGTSYGYRDAWAVGYDGRHVLGVWVGRPDGGSVPGLTGYLAA APILFEAFSRSGVGITPFPPRPAGAVRLTAAELPMPLRRFSSTFSAAQTGAPTEPAPEIVFPPEGARIDVGLSENRNAGI LALKIIGGRAPFRWLANGKPLAETFRRRTASWAPDGGGASTLTVIDAAGRTASVSVFLE >Mature_699_residues MLMKSTWRVWARRAGITAAVMTAATIAGAFTLHHLDQAYPPPLENTGALSQEVVDRKGALLRVYAAPDGRWRLKAEIEQL DPQFIKMLVAYEDRRFWSHSGVDPIALARAAMQLVLNGRVVSGGSTLSMQLARLIEPREERSFSAKFRQIARALQIEWRL SKREILNRYLTLAPYGGNLEGVRAASLAWFGKEPQKLTLSEAALLVALPQSPEARRPDRHPDTAKSARDRVLARMAKAGI IAEGEVERASRGKVAAQRLPMPAFAAHLADTVIRATPGELRRPLLLDRGVQAALEEVAREGARRLGRKVSVAMVMADART GDVLARVGSAGYFDSSRAGWIDMSVAERSPGSTLKPFIYALAIEDGLVMQETMIEDRPGNFHGYRPRNFDMEYQGDVTVR QALQMSLNVPAIRLLDAVGTARLISRLKRAGVQLALPKGQAPGLAIGLGGAGLTLEKLVQAYTALANRGEARMLRYSTED EETASTEVLTPAAAWQIADMLSGVVPPQGAPRLGIAYKTGTSYGYRDAWAVGYDGRHVLGVWVGRPDGGSVPGLTGYLAA APILFEAFSRSGVGITPFPPRPAGAVRLTAAELPMPLRRFSSTFSAAQTGAPTEPAPEIVFPPEGARIDVGLSENRNAGI LALKIIGGRAPFRWLANGKPLAETFRRRTASWAPDGGGASTLTVIDAAGRTASVSVFLE
Specific function: Cell wall formation. The enzyme has a penicillin- insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a transpeptidase C-terminal domain which may not be functional [H]
COG id: COG4953
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein PbpC
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1788867, Length=560, Percent_Identity=42.1428571428571, Blast_Score=417, Evalue=1e-118, Organism=Escherichia coli, GI1786343, Length=570, Percent_Identity=30.7017543859649, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI87082258, Length=260, Percent_Identity=30.3846153846154, Blast_Score=123, Evalue=5e-29, Organism=Escherichia coli, GI1789601, Length=163, Percent_Identity=31.9018404907975, Blast_Score=70, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011815 - InterPro: IPR009647 - InterPro: IPR001460 [H]
Pfam domain/function: PF06832 BiPBP_C; PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 75412; Mature: 75412
Theoretical pI: Translated: 10.53; Mature: 10.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMKSTWRVWARRAGITAAVMTAATIAGAFTLHHLDQAYPPPLENTGALSQEVVDRKGAL CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCE LRVYAAPDGRWRLKAEIEQLDPQFIKMLVAYEDRRFWSHSGVDPIALARAAMQLVLNGRV EEEEECCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE VSGGSTLSMQLARLIEPREERSFSAKFRQIARALQIEWRLSKREILNRYLTLAPYGGNLE ECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHEEEECCCCCCC GVRAASLAWFGKEPQKLTLSEAALLVALPQSPEARRPDRHPDTAKSARDRVLARMAKAGI CCCHHHEEECCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC IAEGEVERASRGKVAAQRLPMPAFAAHLADTVIRATPGELRRPLLLDRGVQAALEEVARE EECCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCHHHHCCHHHHHHHHHHH GARRLGRKVSVAMVMADARTGDVLARVGSAGYFDSSRAGWIDMSVAERSPGSTLKPFIYA HHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHEEEE LAIEDGLVMQETMIEDRPGNFHGYRPRNFDMEYQGDVTVRQALQMSLNVPAIRLLDAVGT EEECCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH ARLISRLKRAGVQLALPKGQAPGLAIGLGGAGLTLEKLVQAYTALANRGEARMLRYSTED HHHHHHHHHCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC EETASTEVLTPAAAWQIADMLSGVVPPQGAPRLGIAYKTGTSYGYRDAWAVGYDGRHVLG CHHCCHHEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCEEEE VWVGRPDGGSVPGLTGYLAAAPILFEAFSRSGVGITPFPPRPAGAVRLTAAELPMPLRRF EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHH SSTFSAAQTGAPTEPAPEIVFPPEGARIDVGLSENRNAGILALKIIGGRAPFRWLANGKP HHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCH LAETFRRRTASWAPDGGGASTLTVIDAAGRTASVSVFLE HHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEC >Mature Secondary Structure MLMKSTWRVWARRAGITAAVMTAATIAGAFTLHHLDQAYPPPLENTGALSQEVVDRKGAL CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCE LRVYAAPDGRWRLKAEIEQLDPQFIKMLVAYEDRRFWSHSGVDPIALARAAMQLVLNGRV EEEEECCCCCEEEEHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEE VSGGSTLSMQLARLIEPREERSFSAKFRQIARALQIEWRLSKREILNRYLTLAPYGGNLE ECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHEEEECCCCCCC GVRAASLAWFGKEPQKLTLSEAALLVALPQSPEARRPDRHPDTAKSARDRVLARMAKAGI CCCHHHEEECCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC IAEGEVERASRGKVAAQRLPMPAFAAHLADTVIRATPGELRRPLLLDRGVQAALEEVARE EECCCCCHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHCCCHHHHCCHHHHHHHHHHH GARRLGRKVSVAMVMADARTGDVLARVGSAGYFDSSRAGWIDMSVAERSPGSTLKPFIYA HHHHHCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCHHHEEEE LAIEDGLVMQETMIEDRPGNFHGYRPRNFDMEYQGDVTVRQALQMSLNVPAIRLLDAVGT EEECCCCEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH ARLISRLKRAGVQLALPKGQAPGLAIGLGGAGLTLEKLVQAYTALANRGEARMLRYSTED HHHHHHHHHCCEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC EETASTEVLTPAAAWQIADMLSGVVPPQGAPRLGIAYKTGTSYGYRDAWAVGYDGRHVLG CHHCCHHEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCEEEE VWVGRPDGGSVPGLTGYLAAAPILFEAFSRSGVGITPFPPRPAGAVRLTAAELPMPLRRF EEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHCCHHHHHH SSTFSAAQTGAPTEPAPEIVFPPEGARIDVGLSENRNAGILALKIIGGRAPFRWLANGKP HHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEEECCCCCEEEECCCCH LAETFRRRTASWAPDGGGASTLTVIDAAGRTASVSVFLE HHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10542235; 9205837; 9278503; 9841666 [H]