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The map label for this gene is intD [C]

Identifier: 110632556

GI number: 110632556

Start: 235838

End: 236839

Strand: Reverse

Name: intD [C]

Synonym: Meso_0194

Alternate gene names: 110632556

Gene position: 236839-235838 (Counterclockwise)

Preceding gene: 110632557

Following gene: 110632555

Centisome position: 5.37

GC content: 58.28

Gene sequence:

>1002_bases
ATGCCGCTCAAGCTCTACAAGCGCGGTGAAGTCTGGTGGTACCGTGGCACGGTTGCCGGAAGACGCCTACACGCAAGCGC
TAAAACGACTGACAAAGAAATCGCCCAGCGGCTCGCCAACAGAGCGGAAGCGCAAGCCTTCAAACGTGATCTCGATGGAC
CGGCCTCGGTCCTGACATTCGCGCACGCCGTGACGCTTTATCTCGATGCGGGGAAATCTGACCGCTTCCTAGTCCCCGTC
TTGGAGCATTGGAAGGAAACACTGGTCAAGGACATCACGGCGGGTGCCATCCGGCTTGCGGCCATCAAGGTCTACCCCAA
AGCCTCGCCATCTACACGCAACCGCCAGTTCATCACGCCAACCGTGGCAGTCATCAATCACGCTGCCAGCCTGGAGTTGT
GCCCGCCGCTACGGAAAGTGGAGCGGTTCAAGGTACCCAAAAAGCATCGGGATGAAGCTGATTGGGATTGGGTACTGGCT
TTCGAGAAGGAAGCGCCGCCACATCTGGGGGCGTTGGCTGTTTTCGGTTATCTGACGGGTGCGCGCCTAAGCAGCCTGAC
CGACTTGCATTGGAAGACCATAGATTTCCAGAGGCGTGAAGCTGTCCTATGGAAGACGAAGAACGGCCATGACCACGTGG
TGCATTTGCCGCCCCATCTGGTGGTGAGATTGGCGAACCTGACCACAGACAGGGGTGGAAAGGTGTTTGGCTACTCCAGC
CGCCACAGCGTCAAGTCGGCCTGGAAGGCGTCCATCAAGAGGGCGGGGATAAAACCACTCACACCGCATGCATTGCGGCA
TGGCTTTGCCACCGGGCTTCTAAGGGCCGGTGTAGACCCCGTAACTGTGGCGTGGCTTGGTGGCTGGGAAAGCCCACAGA
TCGTTATCGACATCTACGGGCATGCGATGAAGGACAGAACAGTCACAAACCGGCTTACTGGCCCACTAGCGGCCCAAGGC
CCTGACGCCGCCACAGAAATCCTAACAAAGACAGGTGCTTAG

Upstream 100 bases:

>100_bases
TGCGGGAGATGGCAAGACACCTTGGCGCGTGCCGGATTATCGGCAATCGTATGCTCCTGACGACAGACGATATTGAAGCA
ATTCTGGAGGCAAGCCGTCC

Downstream 100 bases:

>100_bases
ATGAAAAAGGCGATCCCTTACCAAGGGAGTGCTCTACCACTGAGCTACGGCAGCGTCGCGTTCGGGCGGCCTTCTGCCAT
ATCGATCGCCGCAGCGCAAG

Product: phage integrase

Products: NA

Alternate protein names: Integrase Family Protein; Phage Integrase Family Protein; Prophage Integrase; Site-Specific Recombinase Phage Integrase Family; Integrase; Integrase Protein

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MPLKLYKRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTFAHAVTLYLDAGKSDRFLVPV
LEHWKETLVKDITAGAIRLAAIKVYPKASPSTRNRQFITPTVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLA
FEKEAPPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSS
RHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYGHAMKDRTVTNRLTGPLAAQG
PDAATEILTKTGA

Sequences:

>Translated_333_residues
MPLKLYKRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTFAHAVTLYLDAGKSDRFLVPV
LEHWKETLVKDITAGAIRLAAIKVYPKASPSTRNRQFITPTVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLA
FEKEAPPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSS
RHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYGHAMKDRTVTNRLTGPLAAQG
PDAATEILTKTGA
>Mature_332_residues
PLKLYKRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTFAHAVTLYLDAGKSDRFLVPVL
EHWKETLVKDITAGAIRLAAIKVYPKASPSTRNRQFITPTVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLAF
EKEAPPHLGALAVFGYLTGARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSSR
HSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYGHAMKDRTVTNRLTGPLAAQGP
DAATEILTKTGA

Specific function: Integrase From The Cryptic Lambdoic Prophage Dlp12. Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From Th

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36942; Mature: 36811

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLKLYKRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTF
CCCEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AHAVTLYLDAGKSDRFLVPVLEHWKETLVKDITAGAIRLAAIKVYPKASPSTRNRQFITP
HHHHEEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCEEECH
TVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLAFEKEAPPHLGALAVFGYLTG
HHHHHHCCCCCCCCCCHHHHHHCCCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
ARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSS
HHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCEEEECCC
RHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECC
HAMKDRTVTNRLTGPLAAQGPDAATEILTKTGA
CHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
PLKLYKRGEVWWYRGTVAGRRLHASAKTTDKEIAQRLANRAEAQAFKRDLDGPASVLTF
CCEEEECCCEEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
AHAVTLYLDAGKSDRFLVPVLEHWKETLVKDITAGAIRLAAIKVYPKASPSTRNRQFITP
HHHHEEEEECCCCCCEEHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCEEECH
TVAVINHAASLELCPPLRKVERFKVPKKHRDEADWDWVLAFEKEAPPHLGALAVFGYLTG
HHHHHHCCCCCCCCCCHHHHHHCCCCHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHH
ARLSSLTDLHWKTIDFQRREAVLWKTKNGHDHVVHLPPHLVVRLANLTTDRGGKVFGYSS
HHHHHHHHCCEEEECCCCCCEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCCEEEECCC
RHSVKSAWKASIKRAGIKPLTPHALRHGFATGLLRAGVDPVTVAWLGGWESPQIVIDIYG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEECC
HAMKDRTVTNRLTGPLAAQGPDAATEILTKTGA
CHHCCCHHHHHCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA