Definition | Mesorhizobium sp. BNC1, complete genome. |
---|---|
Accession | NC_008254 |
Length | 4,412,446 |
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The map label for this gene is bcsP31 [H]
Identifier: 110632539
GI number: 110632539
Start: 220601
End: 221581
Strand: Direct
Name: bcsP31 [H]
Synonym: Meso_0177
Alternate gene names: 110632539
Gene position: 220601-221581 (Clockwise)
Preceding gene: 110632538
Following gene: 110632540
Centisome position: 5.0
GC content: 59.94
Gene sequence:
>981_bases ATGAAATCCAATCGAACACTCGGTCTTGGACTCGCCGCGGCCATGGTCGGTACGCTCCTGGCCGGCAATGCCGCTGCACA GGAGCAGCGTTTCGTATCGATCGGTACGGGCGGCGTAACCGGAGTCTACTATCCGGTCGGTGGCGCCATATGCCGTCTGA TGAATCAGAACCGTCGTGAGCATGGCGTTCGCTGTTCGGTGGAATCGACCGGCGGCTCGGTTTTCAACGTGAACGCAATC AAGGGCGGCGACCTGGAGTTCGGCACGGTGCAGTCGGATGTTCAATATAATGCCTTCAATGGCGAGGCCGATTTCGCCGA CGGGGGCGCGCACGAGAAGCTGCGCTCGGTATTCTCGCTCCATGCGGAGCCGCTGACGGTTGTGGCACGTGCCGATGCCG ACATTTCCGACTTCGACGGCCTCAAAGGCAAGCGGGTCAATATCGGGAATCCCGGCTCTGGCCAGCGTGCGCTGATGGAC CTGCTCATTGCCGAAAAGGGCTGGACCAATGCCGATTTTGCTCTCGCGTCGGAGCTTGCTCCGGCGGAGCAGGCTTCCGC GCTGTGCGATAACAACATCGATGCCTTTGCCTACACGGTTGGCCATCCGGCCGGCGCTATCGAGGAGGCTACTACGACTT GTGACAGCGTGATCGTGCCGGTGGAAGGCGAACTGGTCGACAAGCTGGTCGAGGAAAATCCATACTACTTCAAGGCCGTT ATCCCAGGTGGCATGTATCGTGGCACCGATCAGGACGTGAACACCTTCGGCGTGGGCGCTACGCTGGTGACTTCCGCAGA TGTGCCGGAGGACGTCGTTTATACGCTGGTGAAGGCGGTCTTCGACAATTTCGACGACTTCAAGAGCCTGCATCCGGCGC TTGCCGGCTTGACGCCCGAGCAGATGGTCAGCCAGGGCAATTCGGCTCCGCTCCATCCGGGTGCCGAGAAGTACTACGAG GAAAAAGGCTGGCTCAACTAA
Upstream 100 bases:
>100_bases CTGATGTTCCGCACGTGGCGCAGGCGCTGGCTTTCGCAATGCGAGGGCCGTTACGATATCGACGTGCATATCATTGTATA GGGATCTAGGGAGTCGCCAT
Downstream 100 bases:
>100_bases GCTAGCTTTCCAAGAGGGCGCCCGTGTGGGCGCCCTTCTTCGTTGCGCATGCGCGACAGCGCGCGATAGCTAACATGAAG TGCGCAATAACTAAAATTGA
Product: TRAP transporter solute receptor TAXI family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MKSNRTLGLGLAAAMVGTLLAGNAAAQEQRFVSIGTGGVTGVYYPVGGAICRLMNQNRREHGVRCSVESTGGSVFNVNAI KGGDLEFGTVQSDVQYNAFNGEADFADGGAHEKLRSVFSLHAEPLTVVARADADISDFDGLKGKRVNIGNPGSGQRALMD LLIAEKGWTNADFALASELAPAEQASALCDNNIDAFAYTVGHPAGAIEEATTTCDSVIVPVEGELVDKLVEENPYYFKAV IPGGMYRGTDQDVNTFGVGATLVTSADVPEDVVYTLVKAVFDNFDDFKSLHPALAGLTPEQMVSQGNSAPLHPGAEKYYE EKGWLN
Sequences:
>Translated_326_residues MKSNRTLGLGLAAAMVGTLLAGNAAAQEQRFVSIGTGGVTGVYYPVGGAICRLMNQNRREHGVRCSVESTGGSVFNVNAI KGGDLEFGTVQSDVQYNAFNGEADFADGGAHEKLRSVFSLHAEPLTVVARADADISDFDGLKGKRVNIGNPGSGQRALMD LLIAEKGWTNADFALASELAPAEQASALCDNNIDAFAYTVGHPAGAIEEATTTCDSVIVPVEGELVDKLVEENPYYFKAV IPGGMYRGTDQDVNTFGVGATLVTSADVPEDVVYTLVKAVFDNFDDFKSLHPALAGLTPEQMVSQGNSAPLHPGAEKYYE EKGWLN >Mature_326_residues MKSNRTLGLGLAAAMVGTLLAGNAAAQEQRFVSIGTGGVTGVYYPVGGAICRLMNQNRREHGVRCSVESTGGSVFNVNAI KGGDLEFGTVQSDVQYNAFNGEADFADGGAHEKLRSVFSLHAEPLTVVARADADISDFDGLKGKRVNIGNPGSGQRALMD LLIAEKGWTNADFALASELAPAEQASALCDNNIDAFAYTVGHPAGAIEEATTTCDSVIVPVEGELVDKLVEENPYYFKAV IPGGMYRGTDQDVNTFGVGATLVTSADVPEDVVYTLVKAVFDNFDDFKSLHPALAGLTPEQMVSQGNSAPLHPGAEKYYE EKGWLN
Specific function: Unknown
COG id: COG2358
COG function: function code R; TRAP-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015168 - InterPro: IPR011852 [H]
Pfam domain/function: PF09084 NMT1 [H]
EC number: NA
Molecular weight: Translated: 34418; Mature: 34418
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSNRTLGLGLAAAMVGTLLAGNAAAQEQRFVSIGTGGVTGVYYPVGGAICRLMNQNRRE CCCCCCCHHHHHHHHHHHHHHCCHHHHHCEEEEECCCCCCEEEECHHHHHHHHHHCCHHH HGVRCSVESTGGSVFNVNAIKGGDLEFGTVQSDVQYNAFNGEADFADGGAHEKLRSVFSL CCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH HAEPLTVVARADADISDFDGLKGKRVNIGNPGSGQRALMDLLIAEKGWTNADFALASELA CCCCEEEEEECCCCCHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCC PAEQASALCDNNIDAFAYTVGHPAGAIEEATTTCDSVIVPVEGELVDKLVEENPYYFKAV CHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCEEEEECCHHHHHHHHHCCCCEEEEE IPGGMYRGTDQDVNTFGVGATLVTSADVPEDVVYTLVKAVFDNFDDFKSLHPALAGLTPE CCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHH QMVSQGNSAPLHPGAEKYYEEKGWLN HHHHCCCCCCCCCCHHHHHHHCCCCC >Mature Secondary Structure MKSNRTLGLGLAAAMVGTLLAGNAAAQEQRFVSIGTGGVTGVYYPVGGAICRLMNQNRRE CCCCCCCHHHHHHHHHHHHHHCCHHHHHCEEEEECCCCCCEEEECHHHHHHHHHHCCHHH HGVRCSVESTGGSVFNVNAIKGGDLEFGTVQSDVQYNAFNGEADFADGGAHEKLRSVFSL CCCEEEEECCCCCEEEEEEECCCCCEECCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHH HAEPLTVVARADADISDFDGLKGKRVNIGNPGSGQRALMDLLIAEKGWTNADFALASELA CCCCEEEEEECCCCCHHCCCCCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHCC PAEQASALCDNNIDAFAYTVGHPAGAIEEATTTCDSVIVPVEGELVDKLVEENPYYFKAV CHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCEEEEECCHHHHHHHHHCCCCEEEEE IPGGMYRGTDQDVNTFGVGATLVTSADVPEDVVYTLVKAVFDNFDDFKSLHPALAGLTPE CCCCCCCCCCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHH QMVSQGNSAPLHPGAEKYYEEKGWLN HHHHCCCCCCCCCCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3133283 [H]