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The map label for this gene is rbfA

Identifier: 109947688

GI number: 109947688

Start: 1004413

End: 1004748

Strand: Reverse

Name: rbfA

Synonym: Hac_1158

Alternate gene names: 109947688

Gene position: 1004748-1004413 (Counterclockwise)

Preceding gene: 109947689

Following gene: 109947687

Centisome position: 64.66

GC content: 36.31

Gene sequence:

>336_bases
ATGAACGCCCATAAAGAACGCTTAGAATCCAATCTTTTAGAATTGTTACAAGAAGCTTTATCAAGTTTGAATGACAGCGA
GTTGAATTCTTTAAGCGTGACTAAAGTGGAATGCTCTAAAGGGAAGCACCACGCTTTTGTGTTTGTGCTTTCACAAGATC
ATAAAATCCTTTCTAAATTAAAAAAAGCTGAGGGCTTGATTAGGCAGTTTGTTTTGCAAGCAAGCGGATGGTTTAAATGC
CCAAAACTCAGTTTTATTTTAGACAATAGTTTAGAAAAGCAGCTCCGCCTAGACGCTATATTTAATGAGATCGCTAAAGG
AAAAGATGATGACTAA

Upstream 100 bases:

>100_bases
AAGGCTATGAATGCGGAATCATGCTAGAAAATTATAATGAAATTAAAGTGGGCGATGTGTTTGAGACCTATAAAGAAATC
CATAAAAAAAGAACTCTCTA

Downstream 100 bases:

>100_bases
AAGAATAGAAGAACGAATAGAAGGCGTGATTGAAAGCTTGGGTTATTTGCTTTATGATGTGAGTTTGATTAAAGAAAGTG
AGCAACATATTTTAAGGGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNAHKERLESNLLELLQEALSSLNDSELNSLSVTKVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFILDNSLEKQLRLDAIFNEIAKGKDDD

Sequences:

>Translated_111_residues
MNAHKERLESNLLELLQEALSSLNDSELNSLSVTKVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFILDNSLEKQLRLDAIFNEIAKGKDDD
>Mature_111_residues
MNAHKERLESNLLELLQEALSSLNDSELNSLSVTKVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFILDNSLEKQLRLDAIFNEIAKGKDDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_HELAH (Q17WQ9)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_664916.1
- ProteinModelPortal:   Q17WQ9
- STRING:   Q17WQ9
- GeneID:   4177065
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_1158
- NMPDR:   fig|382638.8.peg.1125
- eggNOG:   COG0858
- HOGENOM:   HBG321089
- OMA:   WFKCPKL
- ProtClustDB:   PRK00521
- BioCyc:   HACI382638:HAC_1158-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 12582; Mature: 12582

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHKERLESNLLELLQEALSSLNDSELNSLSVTKVECSKGKHHAFVFVLSQDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFILDNSLEKQLRLDAIFNEIAKGKDDD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAHKERLESNLLELLQEALSSLNDSELNSLSVTKVECSKGKHHAFVFVLSQDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFILDNSLEKQLRLDAIFNEIAKGKDDD
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA