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The map label for this gene is ygcF [C]

Identifier: 109947617

GI number: 109947617

Start: 938105

End: 938860

Strand: Reverse

Name: ygcF [C]

Synonym: Hac_1082

Alternate gene names: 109947617

Gene position: 938860-938105 (Counterclockwise)

Preceding gene: 109947618

Following gene: 109947616

Centisome position: 60.42

GC content: 36.38

Gene sequence:

>756_bases
ATGAAACTCCCAGTCGTTGAGAGCTTTTTTTCCTTACAAGGTGAAGGCCAAAGGATAGGCAAGCCCAGTCTTTTTTTGCG
TTTGGGGGGGTGTAACCTTTCTTGTAAGGGATTTGGTTGCAAAACCTTATTCAATGATGAAATTTTAATAGGTTGTGATA
GTTTGTATGCGGTGCACCCTAAATTTAAAAAATCTTGGGATTATTATAATGAGCCTAAGCCACTGATTGAGCGATTAGTC
CATTTAACCCCCAATCACAAGAATTTTGATTTCATTCTCACAGGCGGGGAGCCAAGCTTATATTTTAATAACCCTATTTT
AACCAGCGTTTTAGAGCATTTCCATCGCAAAAAAATCCCTTTATTTGTGGAGAGTAACGGCTCTATTTTTTTTGAATTTA
GCTCTATTTTAAAAGAATTGCATTTCACCTTAAGCGTCAAACTCTCTCTTTCTTTAGAAAAAGAAAACAAACGGATTAAT
CTTAAAGCCCTACAAAACATTTTAGATAACGCTAAAAGCGTGCATTTTAAATTTGTTTTGGACAGCAAAAACGCCGTGCA
ATCTATCACAGAAATTAAAAGCCTTTTGAAACAACTTTCATTAAAAAATAATGAAATCTTTTTAATGCCTCTGGGCACAA
ATAACAACGAATTAGACAACCATCTAAAAATCATAGCCCCCCTAGCCATAGAGCATGGCTTCAGGCTGAGCGATAGGCTT
CATATCCGCTTGTGGGATAACAAGAAAGGGTTTTAA

Upstream 100 bases:

>100_bases
CATTCAAAGCTTGTGGCAAGACAAGGACTTTTTTAATAAAATCATTAGCGATGAAGAAAAATGCTTTTTTCACGCTAAAC
CCTTACACCAAATCCCTTAA

Downstream 100 bases:

>100_bases
AAGACTTATAATAATACAAGATAGCGTTATTACTTTAAGCTAAAAATTGTTATCATTGCACTCATTGAAAGATTGAGTTA
TTTTATCTCTAAAGTTAGGA

Product: hypothetical protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical Activating; Radical Sam Domain Protein; Phosphoribosylaminoimidazole-Succinocarboxamide Synthase

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEHGFRLSDRL
HIRLWDNKKGF

Sequences:

>Translated_251_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEHGFRLSDRL
HIRLWDNKKGF
>Mature_251_residues
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHPKFKKSWDYYNEPKPLIERLV
HLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIPLFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRIN
LKALQNILDNAKSVHFKFVLDSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEHGFRLSDRL
HIRLWDNKKGF

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28783; Mature: 28783

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEECCCEEEEECCEEEECC
KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP
CHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL
EEEECCCCEEEEHHHHHHHHEEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCEEEEEEEE
DSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEHGFRLSDRL
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEHHHCCCCCCCEE
HIRLWDNKKGF
EEEEECCCCCC
>Mature Secondary Structure
MKLPVVESFFSLQGEGQRIGKPSLFLRLGGCNLSCKGFGCKTLFNDEILIGCDSLYAVHP
CCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCEEECCCCCCEEECCCEEEEECCEEEECC
KFKKSWDYYNEPKPLIERLVHLTPNHKNFDFILTGGEPSLYFNNPILTSVLEHFHRKKIP
CHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHCCCC
LFVESNGSIFFEFSSILKELHFTLSVKLSLSLEKENKRINLKALQNILDNAKSVHFKFVL
EEEECCCCEEEEHHHHHHHHEEEEEEEEEEEEECCCCEEEHHHHHHHHCCCCEEEEEEEE
DSKNAVQSITEIKSLLKQLSLKNNEIFLMPLGTNNNELDNHLKIIAPLAIEHGFRLSDRL
CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEEEEEEHHHCCCCCCCEE
HIRLWDNKKGF
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA