| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is glyS [H]
Identifier: 109947592
GI number: 109947592
Start: 912578
End: 914695
Strand: Reverse
Name: glyS [H]
Synonym: Hac_1057
Alternate gene names: 109947592
Gene position: 914695-912578 (Counterclockwise)
Preceding gene: 109947599
Following gene: 109947591
Centisome position: 58.86
GC content: 36.07
Gene sequence:
>2118_bases TTGCATTTAGATGAATTATTAGTAGAAATTTTGACTGAAGAATTGCCCGCACAAGCGTTATTGAATGAATATAAAGAGAT GCCTAAAAAACTCCACGCTCTGTTTCAAAAACATGCCATAGAGATGCAAAATGAAGTGCAAAATATAGAGATTTTTTACA CCCCTAGGCGTTTGTGTGTGTTTGTTAAAGATTTCCCCCTTTTAACTAAAGAAACCAAAGAAGAATTTTTTGGCCCTCCT GTTGAAATTGCATGCAACCATAAAGACAAAGCACAAGGGCTGAATGCATTAGGTTTAGGGTTTTATCAAAAATTAGGATT AAAAGATCACCAACATTTCCAAACCGCTTTTAAAAACAATAAAGAAGTGCTTTATCACGCTAAAATCAACCCTAAACAGC CCACAAAAAACTTAATCATGCCCATTGTTCTAGAGTTTTTAGAAAGTTTGAATTTTGGAAAATCCATGCGTTGGGGTAGC GTGGAAAAAAGCTTTATCAGACCCATTCATAATATTTGCGTGTTATTTAATGGGGAAAATTTTAATAATATTAAAATCAA AGGGTATGGTTTTAAAACCAAGCAAGCCACAAAAACGCACCGACAAGAGGGTTTTGATTTTATTGGAGTGGACAGCCCTA AAGAATATTTTGAAGTTTTAGAAAAAAACCATGTCATTTTAGACCCTAAAAAGCGCGAAGCGAAAATCTTACAAGAAATC AAAGAGCTAGAAAAAAAGCATCAAATTATTGTAGAGGTGGATAGGGATTTATTAGATGAGATCGTAGCGATCACTGAATA CCCCACTGTGCTTTTGGGGGAGTTTGACAAGGCGTTTTTAAAATTACCCAGTGAAATTATCACCACTTCCATGAAAGAAA ACCAGCGCTATTTTGCAACTTTCAATCAAGAGAGCCAAGAAGAAAGTCAAAAATTGCACAACGGCTTTATCGTGGTGAGT AACGCTATCAATAAAGACAAGCAAAAAATCATTGCAGGCAACCAAAAGGTTTTGAAAGCCCGCTTGAGCGATGCGGTTTT CTTTTATGAAAACGATCTTAAAAAGCCCTTAGACAACACCCCTTTAGAGAGCGTGGTTTTTGTGCAAGGTTTAGGGACTT TAAAGGACAAAATGGAGCGAGAACTAGTCATCGCTCAATATTTGACGCAAAAATACGCTCCATCATTGAATATGCCTTTA GAAAAAGCCCTTGAATTGATTGGTCGGGCTATCAAAATCGCTAAAGCGGATTTGCTCAGTGAAGTGGTGTATGAATTTAC AGAGCTTCAAGGGATCATGGGCTATTACTACGCTTTGAAACAAAATGAAAACGAATTAGTCGCTTTGAGTTTGAAAGAGC AGTATTTGCCCACAAGCGAAAACGCCCCCTTGCCCTCTAGCGTTTTTAGTGCGATCGTTGCTTTGAGCTTGAAATTAGAC AGCTTGTTTTCTCTTTTTAGTGTGGGTAAGATCCCTAGCGGTTCTAAAGATCCTTTTGCTTTAAGGCGCTTGAGTTTTGG GCTATTGAAAATCATCGTGCATTATGGATTAAAATTTGATTTAAAAATGGATTTAAAAAATCTCTTTGAAAAAGTGGGCG TTTATCAAAGCTTTGATTTAGAAGTTTTAGAGAAGTTTTTATTGGAGCGCTTTAATAACTTGATAGATTGTAACCCCTCT ATTATAAGAAGCGTGTTAAACACTAACGAGCGAGATATAGTTGCAATCATTCAAAAAGTCAAAGCCCTAAAACGCTTTTT AGACGACCCTAAAAACGCCCAAAAAAAAGAGTTACTTTTTAGTGCCTTCAAACGCTTGGCCAATATCAATAAAGATCAAA ACCCTAACCAAACAAGCGAATTTTCTACCAATCTTTTTAAAGAGCCGCAAGAGCATGCCCTTTTTAAAGCGTTCAACGCA ATCACAACAAGCGCTTTTGAGAGTTTGGATAGCAAAATAGAGGCTTATTTTAGTTTGCATGCACCTTTGGAAGAATATTT TAAAAGCGTGTTAGTGATGGATAAAGATTTAGAAATCCAAAAAAATCGTAAAAATTTCTTATGGAATGTGTATCAAAGTT TCTTAGAAATTGGGGATGTTAAAGAAATTGCGATTTAA
Upstream 100 bases:
>100_bases GTATTGAGAAATAAATTAAAATAAGAACAAAATCAAGTATAATTCTAACACAATTTAGCTGACTTAAAGAGTGATTTTGT TTTTAGGGAGAATTGAGGTT
Downstream 100 bases:
>100_bases GGTTTTCAAACGCCATCAAACAATGAGGCGTTTTTGTTTGAGAGTCGCTTTTTTGATAAGCATGTGCAGTGGGAGTACAA TTAGTGCTAAAACCTTTACT
Product: glycyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Glycine--tRNA ligase beta subunit; GlyRS [H]
Number of amino acids: Translated: 705; Mature: 705
Protein sequence:
>705_residues MHLDELLVEILTEELPAQALLNEYKEMPKKLHALFQKHAIEMQNEVQNIEIFYTPRRLCVFVKDFPLLTKETKEEFFGPP VEIACNHKDKAQGLNALGLGFYQKLGLKDHQHFQTAFKNNKEVLYHAKINPKQPTKNLIMPIVLEFLESLNFGKSMRWGS VEKSFIRPIHNICVLFNGENFNNIKIKGYGFKTKQATKTHRQEGFDFIGVDSPKEYFEVLEKNHVILDPKKREAKILQEI KELEKKHQIIVEVDRDLLDEIVAITEYPTVLLGEFDKAFLKLPSEIITTSMKENQRYFATFNQESQEESQKLHNGFIVVS NAINKDKQKIIAGNQKVLKARLSDAVFFYENDLKKPLDNTPLESVVFVQGLGTLKDKMERELVIAQYLTQKYAPSLNMPL EKALELIGRAIKIAKADLLSEVVYEFTELQGIMGYYYALKQNENELVALSLKEQYLPTSENAPLPSSVFSAIVALSLKLD SLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIVHYGLKFDLKMDLKNLFEKVGVYQSFDLEVLEKFLLERFNNLIDCNPS IIRSVLNTNERDIVAIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDQNPNQTSEFSTNLFKEPQEHALFKAFNA ITTSAFESLDSKIEAYFSLHAPLEEYFKSVLVMDKDLEIQKNRKNFLWNVYQSFLEIGDVKEIAI
Sequences:
>Translated_705_residues MHLDELLVEILTEELPAQALLNEYKEMPKKLHALFQKHAIEMQNEVQNIEIFYTPRRLCVFVKDFPLLTKETKEEFFGPP VEIACNHKDKAQGLNALGLGFYQKLGLKDHQHFQTAFKNNKEVLYHAKINPKQPTKNLIMPIVLEFLESLNFGKSMRWGS VEKSFIRPIHNICVLFNGENFNNIKIKGYGFKTKQATKTHRQEGFDFIGVDSPKEYFEVLEKNHVILDPKKREAKILQEI KELEKKHQIIVEVDRDLLDEIVAITEYPTVLLGEFDKAFLKLPSEIITTSMKENQRYFATFNQESQEESQKLHNGFIVVS NAINKDKQKIIAGNQKVLKARLSDAVFFYENDLKKPLDNTPLESVVFVQGLGTLKDKMERELVIAQYLTQKYAPSLNMPL EKALELIGRAIKIAKADLLSEVVYEFTELQGIMGYYYALKQNENELVALSLKEQYLPTSENAPLPSSVFSAIVALSLKLD SLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIVHYGLKFDLKMDLKNLFEKVGVYQSFDLEVLEKFLLERFNNLIDCNPS IIRSVLNTNERDIVAIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDQNPNQTSEFSTNLFKEPQEHALFKAFNA ITTSAFESLDSKIEAYFSLHAPLEEYFKSVLVMDKDLEIQKNRKNFLWNVYQSFLEIGDVKEIAI >Mature_705_residues MHLDELLVEILTEELPAQALLNEYKEMPKKLHALFQKHAIEMQNEVQNIEIFYTPRRLCVFVKDFPLLTKETKEEFFGPP VEIACNHKDKAQGLNALGLGFYQKLGLKDHQHFQTAFKNNKEVLYHAKINPKQPTKNLIMPIVLEFLESLNFGKSMRWGS VEKSFIRPIHNICVLFNGENFNNIKIKGYGFKTKQATKTHRQEGFDFIGVDSPKEYFEVLEKNHVILDPKKREAKILQEI KELEKKHQIIVEVDRDLLDEIVAITEYPTVLLGEFDKAFLKLPSEIITTSMKENQRYFATFNQESQEESQKLHNGFIVVS NAINKDKQKIIAGNQKVLKARLSDAVFFYENDLKKPLDNTPLESVVFVQGLGTLKDKMERELVIAQYLTQKYAPSLNMPL EKALELIGRAIKIAKADLLSEVVYEFTELQGIMGYYYALKQNENELVALSLKEQYLPTSENAPLPSSVFSAIVALSLKLD SLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIVHYGLKFDLKMDLKNLFEKVGVYQSFDLEVLEKFLLERFNNLIDCNPS IIRSVLNTNERDIVAIIQKVKALKRFLDDPKNAQKKELLFSAFKRLANINKDQNPNQTSEFSTNLFKEPQEHALFKAFNA ITTSAFESLDSKIEAYFSLHAPLEEYFKSVLVMDKDLEIQKNRKNFLWNVYQSFLEIGDVKEIAI
Specific function: Unknown
COG id: COG0751
COG function: function code J; Glycyl-tRNA synthetase, beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Escherichia coli, GI1789982, Length=722, Percent_Identity=30.3324099722992, Blast_Score=296, Evalue=2e-81,
Paralogues:
None
Copy number: 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 400 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006194 - InterPro: IPR015944 - InterPro: IPR002311 [H]
Pfam domain/function: PF02092 tRNA_synt_2f [H]
EC number: =6.1.1.14 [H]
Molecular weight: Translated: 81207; Mature: 81207
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: PS50861 AA_TRNA_LIGASE_II_GLYAB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLDELLVEILTEELPAQALLNEYKEMPKKLHALFQKHAIEMQNEVQNIEIFYTPRRLCV CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEE FVKDFPLLTKETKEEFFGPPVEIACNHKDKAQGLNALGLGFYQKLGLKDHQHFQTAFKNN EECCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCC KEVLYHAKINPKQPTKNLIMPIVLEFLESLNFGKSMRWGSVEKSFIRPIHNICVLFNGEN CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEECCCC FNNIKIKGYGFKTKQATKTHRQEGFDFIGVDSPKEYFEVLEKNHVILDPKKREAKILQEI CCEEEEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCEEECCCHHHHHHHHHH KELEKKHQIIVEVDRDLLDEIVAITEYPTVLLGEFDKAFLKLPSEIITTSMKENQRYFAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEE FNQESQEESQKLHNGFIVVSNAINKDKQKIIAGNQKVLKARLSDAVFFYENDLKKPLDNT CCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCCCC PLESVVFVQGLGTLKDKMERELVIAQYLTQKYAPSLNMPLEKALELIGRAIKIAKADLLS CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH EVVYEFTELQGIMGYYYALKQNENELVALSLKEQYLPTSENAPLPSSVFSAIVALSLKLD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHH SLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIVHYGLKFDLKMDLKNLFEKVGVYQSFDL HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCH EVLEKFLLERFNNLIDCNPSIIRSVLNTNERDIVAIIQKVKALKRFLDDPKNAQKKELLF HHHHHHHHHHHCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SAFKRLANINKDQNPNQTSEFSTNLFKEPQEHALFKAFNAITTSAFESLDSKIEAYFSLH HHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLEEYFKSVLVMDKDLEIQKNRKNFLWNVYQSFLEIGDVKEIAI CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC >Mature Secondary Structure MHLDELLVEILTEELPAQALLNEYKEMPKKLHALFQKHAIEMQNEVQNIEIFYTPRRLCV CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHEE FVKDFPLLTKETKEEFFGPPVEIACNHKDKAQGLNALGLGFYQKLGLKDHQHFQTAFKNN EECCCCCHHHHHHHHHCCCCCEEEECCCHHHCCCCHHHHHHHHHCCCCHHHHHHHHHCCC KEVLYHAKINPKQPTKNLIMPIVLEFLESLNFGKSMRWGSVEKSFIRPIHNICVLFNGEN CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHEEEEECCCC FNNIKIKGYGFKTKQATKTHRQEGFDFIGVDSPKEYFEVLEKNHVILDPKKREAKILQEI CCEEEEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHCCCEEECCCHHHHHHHHHH KELEKKHQIIVEVDRDLLDEIVAITEYPTVLLGEFDKAFLKLPSEIITTSMKENQRYFAT HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEE FNQESQEESQKLHNGFIVVSNAINKDKQKIIAGNQKVLKARLSDAVFFYENDLKKPLDNT CCCHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCHHHHHHHHHHHEEEECCCCCCCCCCC PLESVVFVQGLGTLKDKMERELVIAQYLTQKYAPSLNMPLEKALELIGRAIKIAKADLLS CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH EVVYEFTELQGIMGYYYALKQNENELVALSLKEQYLPTSENAPLPSSVFSAIVALSLKLD HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHH SLFSLFSVGKIPSGSKDPFALRRLSFGLLKIIVHYGLKFDLKMDLKNLFEKVGVYQSFDL HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHCCCCCCCH EVLEKFLLERFNNLIDCNPSIIRSVLNTNERDIVAIIQKVKALKRFLDDPKNAQKKELLF HHHHHHHHHHHCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH SAFKRLANINKDQNPNQTSEFSTNLFKEPQEHALFKAFNAITTSAFESLDSKIEAYFSLH HHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APLEEYFKSVLVMDKDLEIQKNRKNFLWNVYQSFLEIGDVKEIAI CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA