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The map label for this gene is vapD

Identifier: 109947587

GI number: 109947587

Start: 906507

End: 906743

Strand: Reverse

Name: vapD

Synonym: Hac_1052

Alternate gene names: NA

Gene position: 906743-906507 (Counterclockwise)

Preceding gene: 109947588

Following gene: 109947586

Centisome position: 58.35

GC content: 34.6

Gene sequence:

>237_bases
ATGAATCTGTCAAAAGTTTATTCTGATATTCGTAAATTCATGGAACAACACGCTTTTAAATGGCAACAAGGTGGCATGTG
TTTTGGCGATGAGACAATCAACGCTGTTACTTGTGTCGCTACGGTGCAAATTTTAGCTAAGCAAATACCATGTTTTGCAA
ATTGTGTTAAAGATGTCAGAATGTTAAAAGTAGAAGAAAACAACGATTTAATGCCAGCTATTAAAATCGTTCTGTAA

Upstream 100 bases:

>100_bases
AAATTCTAAGTAAAAATATGCTATAACACAAACAAATAAATGAGATAAGATATATGCTGTAACTTTTGATCTTGACGCAA
ATTGCTTGAATGAAAACGGA

Downstream 100 bases:

>100_bases
GCATGGCTTACTTGCGAGTTTTGACAAGCAAGAAGAGGATTCTTACACTATTTGACGCAATCAAAAAATAATTCATTCAA
TATTAAATCTAATCCGTAAA

Product: virulence associated protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 78

Protein sequence:

>78_residues
MNLSKVYSDIRKFMEQHAFKWQQGGMCFGDETINAVTCVATVQILAKQIPCFANCVKDVRMLKVEENNDLMPAIKIVL

Sequences:

>Translated_78_residues
MNLSKVYSDIRKFMEQHAFKWQQGGMCFGDETINAVTCVATVQILAKQIPCFANCVKDVRMLKVEENNDLMPAIKIVL
>Mature_78_residues
MNLSKVYSDIRKFMEQHAFKWQQGGMCFGDETINAVTCVATVQILAKQIPCFANCVKDVRMLKVEENNDLMPAIKIVL

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016368
- InterPro:   IPR019199 [H]

Pfam domain/function: PF09827 CRISPR_Cas2 [H]

EC number: NA

Molecular weight: Translated: 8867; Mature: 8867

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
11.5 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
11.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSKVYSDIRKFMEQHAFKWQQGGMCFGDETINAVTCVATVQILAKQIPCFANCVKDVR
CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MLKVEENNDLMPAIKIVL
HHHCCCCCCCHHHHHHCC
>Mature Secondary Structure
MNLSKVYSDIRKFMEQHAFKWQQGGMCFGDETINAVTCVATVQILAKQIPCFANCVKDVR
CCHHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
MLKVEENNDLMPAIKIVL
HHHCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]