| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
Click here to switch to the map view.
The map label for this gene is fragment 2
Identifier: 109947574
GI number: 109947574
Start: 901658
End: 902173
Strand: Reverse
Name: fragment 2
Synonym: Hac_1039
Alternate gene names: NA
Gene position: 902173-901658 (Counterclockwise)
Preceding gene: 109947575
Following gene: 109947573
Centisome position: 58.06
GC content: 37.79
Gene sequence:
>516_bases ATGGGGGCATGGTGGAATTACCCAATCTCCCTTTATAATCATGAGTTTTTAAAAGACTTTAACCTTAAAGAGATCATGCC TTTCATGCTTTTAAGCGCTCCCAGCATGCCCTTTGAATTTCTATGCCTTATAGACACCCCTAGCTATAACTCCCCTAATC AAGGCTATACTGCTGAGGACAAACAAGCCTCTAAAGAATACTTAACTCACGCTAAACACATCCTATGGCTCATTAGGTGC GAGGATGGGGGCATTCAAGGTGATGATTTAGGCTATTTGCAAGAATTATACGACGAAGAAGGCAAGAAAGTTTTTATCGT ATTGAGTATGGTTGATGATATACGCGAAAAAAGCCAATTAGAAAAAATCGCTACTAGAACTAAAGAAAAATTAGAAGATA AGGGCATTGAGTTTTTGGGGATTTGCACTCACAGCTCTACAAGGTATCAAGAATATAAAGAGTTTAGTGAAAAAGCCCCA TTTTTGATTCGCTTGAAGAATTTTTGCATTCTTTAA
Upstream 100 bases:
>100_bases AAATTGAATTTAAAACTCTCCGAAAGTATCAACTCTACTACAGCTATCCCTACTTATTGCTTAAAGGGTGAAAAACAAGT TTTGATGGGGCGTTCTCAAA
Downstream 100 bases:
>100_bases ATAAAAGGAGTGAAAAACAAAAGGAAATTTTAAAATATTTATATAGAGTGTATTCTCATGTATGAAGACGCTATTAAACA AGATGCTAGAAAGTTTAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MGAWWNYPISLYNHEFLKDFNLKEIMPFMLLSAPSMPFEFLCLIDTPSYNSPNQGYTAEDKQASKEYLTHAKHILWLIRC EDGGIQGDDLGYLQELYDEEGKKVFIVLSMVDDIREKSQLEKIATRTKEKLEDKGIEFLGICTHSSTRYQEYKEFSEKAP FLIRLKNFCIL
Sequences:
>Translated_171_residues MGAWWNYPISLYNHEFLKDFNLKEIMPFMLLSAPSMPFEFLCLIDTPSYNSPNQGYTAEDKQASKEYLTHAKHILWLIRC EDGGIQGDDLGYLQELYDEEGKKVFIVLSMVDDIREKSQLEKIATRTKEKLEDKGIEFLGICTHSSTRYQEYKEFSEKAP FLIRLKNFCIL >Mature_170_residues GAWWNYPISLYNHEFLKDFNLKEIMPFMLLSAPSMPFEFLCLIDTPSYNSPNQGYTAEDKQASKEYLTHAKHILWLIRCE DGGIQGDDLGYLQELYDEEGKKVFIVLSMVDDIREKSQLEKIATRTKEKLEDKGIEFLGICTHSSTRYQEYKEFSEKAPF LIRLKNFCIL
Specific function: Unknown
COG id: COG0699
COG function: function code R; Predicted GTPases (dynamin-related)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20025; Mature: 19894
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAWWNYPISLYNHEFLKDFNLKEIMPFMLLSAPSMPFEFLCLIDTPSYNSPNQGYTAED CCCCCCCCHHHHCHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCH KQASKEYLTHAKHILWLIRCEDGGIQGDDLGYLQELYDEEGKKVFIVLSMVDDIREKSQL HHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH EKIATRTKEKLEDKGIEFLGICTHSSTRYQEYKEFSEKAPFLIRLKNFCIL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHCC >Mature Secondary Structure GAWWNYPISLYNHEFLKDFNLKEIMPFMLLSAPSMPFEFLCLIDTPSYNSPNQGYTAED CCCCCCCHHHHCHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCH KQASKEYLTHAKHILWLIRCEDGGIQGDDLGYLQELYDEEGKKVFIVLSMVDDIREKSQL HHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHH EKIATRTKEKLEDKGIEFLGICTHSSTRYQEYKEFSEKAPFLIRLKNFCIL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA