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The map label for this gene is fliF [H]

Identifier: 109947514

GI number: 109947514

Start: 852044

End: 853747

Strand: Reverse

Name: fliF [H]

Synonym: Hac_0971

Alternate gene names: 109947514

Gene position: 853747-852044 (Counterclockwise)

Preceding gene: 109947515

Following gene: 109947513

Centisome position: 54.94

GC content: 38.97

Gene sequence:

>1704_bases
TTGGATTTAAAGATATTATTGCAACGGATTGTTGATTTTTTCATCAAACTCAATAAAAAGCAAAAAATCGCCCTGATTGC
AATGGGGGTTTTGATCACGGCTTTGATCGTGTTTTTATTGCTCTATCCTTTTAAGGAAAAAGGCTATGTACAAGGGGGTT
ATGGGGTTTTATTTGAAGGCTTGGATCCTAGCGATAACGCTCTAATCTTGCAGTACCTCCAACAAAACCAAATCCCTTAT
AAAGTCTCCAAAGACGACACTATTCTCATCCCTAAAGATAAAGTCTATGAAGAAAGGATCACTTTAGCTTCTCAAGGGAT
CCCTAAAACGAGTAAAGTGGGTTTTGAAATTTTTGATTCTAAAGACTTTGGGGCGACTGATTTTGATCAAAATGTCAAAC
TCATCCGCGCTATTGAGGGCGAATTGTCGCGCACGATTGAAAGCTTAAATCCTATCCTTAAAGCCAATGTGCATATTGCA
ATCCCTAAAGACAGCGTGTTTGTCGCTAAAGAAGTCCCTCCAAGCGCTTCAGTGATGCTCAAGCTTAAGCCTGATATGAG
GCTCTCGCCCACTCAAATTCTAGGGATTAAAAACTTGATCGCTGCGGCTGTGCCTAAACTCACGATAGAGAATGTGAAAA
TCGTGAATGAAAATGGCGAGCCATTAGGCGAGGGCGATATTTTAGAAAATTCCAAAGAATTAGCCCTAGAGCAATTGCAC
TACAAACAAAATTTTGAAAACATTTTAGAAAGTAAGATCGTCAATATTTTAGCCCCTATTGTGGGGGGTAAAAACAAGGT
GGTCGCAAGGGTCAATGCGGAGTTTGATTTCAGCCAAAAGAAAAGCACCAAAGAGACTTTTGATCCTAATAATGTCGTAA
GGAGCGAGCAAAATTTAGAAGAAAAAAAAGAAGGTGCTCCTAAAAAGCAAGTCGGCGGTGTGCCTGGAGTTGTGAGCAAT
ATCGGTCCTGTGCAAGGATTAAAGGACAATAAAGATCAAGAAAAATACGAAAAGTCCCAAAACACGACCAATTATGAAGT
GGGTAAAACCATTAGCGAAATTAAGGGCGAGTTTGGCACTTTGGTGCGCTTGAATGCGGCGGTTGTGGTAGATGGCAAGT
ATAAAATTGCACTTAAAGATGGGACAAACGCTTTAGAATATGAACCCTTGAGTGATGAAGCGCTTAAAAAAATCAACGCC
CTAGTGAAACAAGCCATTGGCTATAACCAAAATAGAGGCGATGATGTGGCAGTGAGTAATTTTGAATTCAACCCCATAAT
CCCTACGATTGATAACGCCACTTTTGGCGAAAAAATCATGCATAAAACCCAAAAAATATTAGGATCTTTTACGCCTTTAA
TCAAGTATCTTTTGGTGTTTGTGGTGCTCTTCATCTTCTATAAAAAAGTGATTGTGCCTTTCAGCGAGCGTATGCTAGAA
GTGGTGCCTGATGAAGATAAGGAAGTGAAATCCATGTTTGAAGAAATGGATGAAGAAGAAGATGAAATGAATAAATTGGG
CGATTTGAAAAAGAAAGTAGAAGATCAATTAGGGCTTAATGCAACCTTTAGCGAAGAAGAAGTAAGATATGAAATTATTT
TAGAAAAGATTAGAGGGACCCTTAAAGAGCGCCCTGATGAAATTGCAATGCTCTTTAAACTCTTAATCAAAGATGAAATT
TCTTCAGACGGCATCAAAGGTTAA

Upstream 100 bases:

>100_bases
AGGGGCTTGTTTTTCCATAGGGATTTATTTGAGCGTGTTTAAGAGAATTTGATTCCAACAAACGGCTTAAAAGAATGAAA
AATTTATCGAGGTTTTAATA

Downstream 100 bases:

>100_bases
AAAAGGCTAAAGTATAAAGGTTAAAGATAAAGGCTAAAAATGGCAATCAAGCTCACCCCTAAACAAAAAATGCAATTAGA
CGAACTTTCTATGAGTGAAA

Product: flagellar MS-ring protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 567; Mature: 567

Protein sequence:

>567_residues
MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEGLDPSDNALILQYLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDSKDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLH
YKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKDQEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDGIKG

Sequences:

>Translated_567_residues
MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEGLDPSDNALILQYLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDSKDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLH
YKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKDQEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDGIKG
>Mature_567_residues
MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEGLDPSDNALILQYLQQNQIPY
KVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDSKDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIA
IPKDSVFVAKEVPPSASVMLKLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLH
YKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLEEKKEGAPKKQVGGVPGVVSN
IGPVQGLKDNKDQEKYEKSQNTTNYEVGKTISEIKGEFGTLVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINA
LVKQAIGYNQNRGDDVAVSNFEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE
VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGTLKERPDEIAMLFKLLIKDEI
SSDGIKG

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=584, Percent_Identity=31.8493150684932, Blast_Score=245, Evalue=7e-66,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 63557; Mature: 63557

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEG
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEC
LDPSDNALILQYLQQNQIPYKVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDS
CCCCCCHHHHHHHHHCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECC
KDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLH
EECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDGIKG
HHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDLKILLQRIVDFFIKLNKKQKIALIAMGVLITALIVFLLLYPFKEKGYVQGGYGVLFEG
CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEC
LDPSDNALILQYLQQNQIPYKVSKDDTILIPKDKVYEERITLASQGIPKTSKVGFEIFDS
CCCCCCHHHHHHHHHCCCCEEECCCCEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEECC
KDFGATDFDQNVKLIRAIEGELSRTIESLNPILKANVHIAIPKDSVFVAKEVPPSASVML
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHCCEEEEECCCCEEEEECCCCCCEEEE
KLKPDMRLSPTQILGIKNLIAAAVPKLTIENVKIVNENGEPLGEGDILENSKELALEQLH
EECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEEECCCCCCCCCCCHHCCHHHHHHHHHH
YKQNFENILESKIVNILAPIVGGKNKVVARVNAEFDFSQKKSTKETFDPNNVVRSEQNLE
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHCCHHHHH
EKKEGAPKKQVGGVPGVVSNIGPVQGLKDNKDQEKYEKSQNTTNYEVGKTISEIKGEFGT
HHHHCCCHHHCCCCCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
LVRLNAAVVVDGKYKIALKDGTNALEYEPLSDEALKKINALVKQAIGYNQNRGDDVAVSN
EEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
FEFNPIIPTIDNATFGEKIMHKTQKILGSFTPLIKYLLVFVVLFIFYKKVIVPFSERMLE
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
VVPDEDKEVKSMFEEMDEEEDEMNKLGDLKKKVEDQLGLNATFSEEEVRYEIILEKIRGT
HCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
LKERPDEIAMLFKLLIKDEISSDGIKG
HHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 1551848; 8224881 [H]