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The map label for this gene is hofD

Identifier: 109947280

GI number: 109947280

Start: 620950

End: 622347

Strand: Direct

Name: hofD

Synonym: Hac_0706

Alternate gene names: NA

Gene position: 620950-622347 (Clockwise)

Preceding gene: 109947279

Following gene: 109947283

Centisome position: 39.96

GC content: 40.56

Gene sequence:

>1398_bases
TTGAAAAACAAAAAGTATTTTTCTTACTCCTTCTCTTTTTTACTGCTTTCTAGTCTCTTTTTTTCCAAACTTCAAGCTTA
CAATTTCAACATGAGCATCACTGGAAAAGTGAGCAGCTACACCAAGTATGGCTTTAACGACCAAAGATACCAACCCTCTA
AAGACATTTACCCCACAGGTAGCTACACTTCTTTACTGGGCGAATTGAATTTGAGCATGGGTTTATACAAGGGTTTGAGA
GCGGAAGTAGGGGGCATGATGGCAGCACTTCCCTATGACTCCACCGCCTATCAAGGCAACAATATCCCTAATGGACAGCC
TGGCTCTAGGACGGATCCTTTTGGTCCGGGTATCTTTTGGCAATACATTGGCTGGTATGCGGGGCATAGTGGTTTGCATG
TGCAAAAACCTCGTTTGGCTATGGTGCATAACGCCTTTTTGAGCTACAACTACAAAAAAGATAAATTCAGTTTGGGTGTG
AAAGGGGGGCGCTATGAGGCTGAAGATTATGACTGGTTCACTTCTTATAGTCAAGGCGTTGAGGGTTTTATCAAATACAA
AGACACTAAATTGAGAGTGATGTATTCAGACGCTAGGGCTTCAGCGTCAAGCGATTGGTTTTGGTATTTTGGGCGTTACT
ATACGAGCGGTAAGGCTCTAATGATTGCAGATTTAAAATACGAAAAAAATGGTTTGAAAATCAACCCTTATTTTTATGCG
ATCTTTCAAAGGATGTATGCACCAGGCATCAATGTCACTTATGATACCAACCCTAATTTTAATAATAAGGGTTTTCGTTT
TGTAGGCACTTTTGTGGGGCTTTTCCCAATTTTTGTCACCCCGGCTGATCAAAACGATATAATCCTCTTCCAACAAGTGC
CATTGGGTAAGAGTGGGCAAACTTATTTTTTCCGCACCCGTTTTTATTATAACAAGTGGCAATTTGGGGGCAGTGTCTAT
AAAAATATCGGTAACGCTAATGGCGATATAGGTATTTATGGGGATCCTTTGGGGTATAATATTTGGACGAATAGTATTTA
TGACGCAGAAATCAACAATATCGTTGGCGCTGATGTGATCGATGGCTTTGCTTATGTGGGATCGAGTTATAAAGGGCTTA
GCTGGAAAATTTTAGGCCGTTGGACTGACAGCCCAAGGGCTGATGAAAGGAGTCTTGCACTCTTTTTGAGCTATTTTTCT
AACCGCTATAATATTAGACTGGATTTAAAACTAGAATATTATGGCAATATCACCAAAAAAGGCTATTGTATTGGGTATTG
TGGCATGTATGTCCCGGCTGATCCTAATGGGCCTGGCACACAGCCTTTAACGCACAATGTGTATTCTGATAGAAGCCATT
TGATGTTTACCATTACTTATGGTTTTAGGGTTTATTAA

Upstream 100 bases:

>100_bases
CCATTTGATGACGCATATCAGTTATAGTTTCTAAGAGGGTTCTCTATCCCTTAGATATGATTTTTGTATTTTTTGGTTTA
GTATCTTTAGGAGTAGGGCT

Downstream 100 bases:

>100_bases
AGCGTTTTTATCAGTTTTTGATGGGTTTTTCACAGGCTTCATTTTTTTAAAAAAATGATAAAATACTGAATACAAGATTT
TAAACTAAAGGAAAACCATG

Product: hof family outer membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein; Hof Family Outer Membrane Protein; Outer Membrane Protein HofH; Outermembrane Protein HofE; Outer Membrane Protein HofF; Outer Membrane Protein HofA; Outer Membrane Protein HofC; Outer Membrane Protein HofB; Outer Membrane Protein HofD

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MKNKKYFSYSFSFLLLSSLFFSKLQAYNFNMSITGKVSSYTKYGFNDQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLR
AEVGGMMAALPYDSTAYQGNNIPNGQPGSRTDPFGPGIFWQYIGWYAGHSGLHVQKPRLAMVHNAFLSYNYKKDKFSLGV
KGGRYEAEDYDWFTSYSQGVEGFIKYKDTKLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKNGLKINPYFYA
IFQRMYAPGINVTYDTNPNFNNKGFRFVGTFVGLFPIFVTPADQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVY
KNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVIDGFAYVGSSYKGLSWKILGRWTDSPRADERSLALFLSYFS
NRYNIRLDLKLEYYGNITKKGYCIGYCGMYVPADPNGPGTQPLTHNVYSDRSHLMFTITYGFRVY

Sequences:

>Translated_465_residues
MKNKKYFSYSFSFLLLSSLFFSKLQAYNFNMSITGKVSSYTKYGFNDQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLR
AEVGGMMAALPYDSTAYQGNNIPNGQPGSRTDPFGPGIFWQYIGWYAGHSGLHVQKPRLAMVHNAFLSYNYKKDKFSLGV
KGGRYEAEDYDWFTSYSQGVEGFIKYKDTKLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKNGLKINPYFYA
IFQRMYAPGINVTYDTNPNFNNKGFRFVGTFVGLFPIFVTPADQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVY
KNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVIDGFAYVGSSYKGLSWKILGRWTDSPRADERSLALFLSYFS
NRYNIRLDLKLEYYGNITKKGYCIGYCGMYVPADPNGPGTQPLTHNVYSDRSHLMFTITYGFRVY
>Mature_465_residues
MKNKKYFSYSFSFLLLSSLFFSKLQAYNFNMSITGKVSSYTKYGFNDQRYQPSKDIYPTGSYTSLLGELNLSMGLYKGLR
AEVGGMMAALPYDSTAYQGNNIPNGQPGSRTDPFGPGIFWQYIGWYAGHSGLHVQKPRLAMVHNAFLSYNYKKDKFSLGV
KGGRYEAEDYDWFTSYSQGVEGFIKYKDTKLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKNGLKINPYFYA
IFQRMYAPGINVTYDTNPNFNNKGFRFVGTFVGLFPIFVTPADQNDIILFQQVPLGKSGQTYFFRTRFYYNKWQFGGSVY
KNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVIDGFAYVGSSYKGLSWKILGRWTDSPRADERSLALFLSYFS
NRYNIRLDLKLEYYGNITKKGYCIGYCGMYVPADPNGPGTQPLTHNVYSDRSHLMFTITYGFRVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53187; Mature: 53187

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKKYFSYSFSFLLLSSLFFSKLQAYNFNMSITGKVSSYTKYGFNDQRYQPSKDIYPTG
CCCCEEEEEEHHHHHHHHHHHHHHHHEECCEEEEECCCCCEECCCCCCCCCCCCCCCCCC
SYTSLLGELNLSMGLYKGLRAEVGGMMAALPYDSTAYQGNNIPNGQPGSRTDPFGPGIFW
CHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QYIGWYAGHSGLHVQKPRLAMVHNAFLSYNYKKDKFSLGVKGGRYEAEDYDWFTSYSQGV
HHHHHHCCCCCCEEECCCHHHEEHHHHCCCCCCCEEEEECCCCEECCCCCHHHHHHHHCC
EGFIKYKDTKLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKNGLKINPYFYA
CEEEEEECEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEECHHHHH
IFQRMYAPGINVTYDTNPNFNNKGFRFVGTFVGLFPIFVTPADQNDIILFQQVPLGKSGQ
HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCC
TYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVI
EEEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCEEECCCEEECHHCCCCCHHHH
DGFAYVGSSYKGLSWKILGRWTDSPRADERSLALFLSYFSNRYNIRLDLKLEYYGNITKK
HHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCC
GYCIGYCGMYVPADPNGPGTQPLTHNVYSDRSHLMFTITYGFRVY
CEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEC
>Mature Secondary Structure
MKNKKYFSYSFSFLLLSSLFFSKLQAYNFNMSITGKVSSYTKYGFNDQRYQPSKDIYPTG
CCCCEEEEEEHHHHHHHHHHHHHHHHEECCEEEEECCCCCEECCCCCCCCCCCCCCCCCC
SYTSLLGELNLSMGLYKGLRAEVGGMMAALPYDSTAYQGNNIPNGQPGSRTDPFGPGIFW
CHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
QYIGWYAGHSGLHVQKPRLAMVHNAFLSYNYKKDKFSLGVKGGRYEAEDYDWFTSYSQGV
HHHHHHCCCCCCEEECCCHHHEEHHHHCCCCCCCEEEEECCCCEECCCCCHHHHHHHHCC
EGFIKYKDTKLRVMYSDARASASSDWFWYFGRYYTSGKALMIADLKYEKNGLKINPYFYA
CEEEEEECEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCEEECHHHHH
IFQRMYAPGINVTYDTNPNFNNKGFRFVGTFVGLFPIFVTPADQNDIILFQQVPLGKSGQ
HHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHEEEEECCCCCCEEEEEECCCCCCCC
TYFFRTRFYYNKWQFGGSVYKNIGNANGDIGIYGDPLGYNIWTNSIYDAEINNIVGADVI
EEEEEEEEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCEEECCCEEECHHCCCCCHHHH
DGFAYVGSSYKGLSWKILGRWTDSPRADERSLALFLSYFSNRYNIRLDLKLEYYGNITKK
HHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCC
GYCIGYCGMYVPADPNGPGTQPLTHNVYSDRSHLMFTITYGFRVY
CEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA