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The map label for this gene is 109947133

Identifier: 109947133

GI number: 109947133

Start: 465151

End: 466587

Strand: Direct

Name: 109947133

Synonym: Hac_0542

Alternate gene names: NA

Gene position: 465151-466587 (Clockwise)

Preceding gene: 109947131

Following gene: 109947134

Centisome position: 29.93

GC content: 38.14

Gene sequence:

>1437_bases
TTGGAATTGAAAAAAATCGCCCTTATTTTAGATGGCATTGTAGCAAAAAATTTTTTAGACTTGGTGTTAAGGCATTATTC
TAGTCATAATTTTTATATAGTGGTTGTCAAAGATGAGAATCTTATCCCTAAAAATTACCCAAGCACTTTCGCGTTTTATT
GCTTTGATGCGACTTCTAGTTTCAGGCTTTTGCAAGCGCTAGATGATGAGGTGAGCGATTTGTTTTTGATCATGCAAGAT
GCAAAAGAGCAACGCATTATCCACAAAATCATTCAAACCCACTTCAAACGCATGCGCGTGGTTTTGAGCGTGAAAAGAGA
GGGCGAAAACGAAAATGACGAAAAGCATGAAAGTGAAAAACTGGTTTTGATTGATGAATTTGAAGTTTTAGCCAATAAGT
TTATTTCCCGCTTGCCTAATATCCCTAGCACCCCTAGAGAGTTTGGGTTAGGGAAGGGCGAAATCATGGAGATTGGCGTG
CCTTTTGGGAGTATTTTTGCTTACAGGCATGTTGGCTCTATTAGGCAAAAAGAATACAAAATCGTAGGGCTTTATCGCAA
CGATGTTTTTTTACTCGCCACTAAATCTTTAGTTATTCAGCCAAGAGACATTCTTTTAGTGGTGGGCAATCCGGAAATTT
TAAACGCAGTGTATCTTCAGGTCAAAAGCCATGTGGGGCAATTCCCAGCCCCCTTTGGGAAGAGCATTTATTTATACATT
GATATGCGTTCACAAAGCAAAAAAGCGATGATGCGCGATGTGTATCAAGCTTTGTTTTTGCACAAACATTTAAAAAGCTA
TAAGCTCTATATCCAGGTTTTACACCCCACTAGCCCTAAGTTTTACCATAAATTTTTAGCGCTAGAAACAGAGGGCATTG
AAGTGAACTTTGATTTTTATGGGAAAAGTTTTATCCAAAAGCTCCATGAAGACCATCAAAAAAAAATGGGCTTGATCATG
GTTGGCAGGGAGCTTTTTTTACCCAAAAAACACCGCAAAGCCTTGTATAAAACAGCCACCCCAGTTTATAAAACCAACGC
TTTTGGCTTGTCTAAAGTCTCTCAAAGCGTTGTGGTTTTGAATGAAAGCTTGGATATTAATGAGGACATGTCTTCAGTCA
TCTTTGATGTGTCTATGCAAATGGATTTAAGCTTGTTGCTCTATGATTTTGACCCTAACAAACGCTATAAAAACGAGATT
GTCAATCATTATGAAAATTTAGCCAACGCGCTCAACCGCAAGATTAAGATTTTCCAAACGGACACGAAAAACCCTATCAT
GCATCTCAATTCCTTAAAAGATCCTATTTTGCATTTTATACCTTTTGAAGCGTGCATCACGAAAACGCGCTTTTTGTGGT
TTTTATCCACTAAAGTGGAAAAATTGGCATTTTTAAGCGACGATAACCCTCAAATTTTTATTCCCGTAGCGGAGTGA

Upstream 100 bases:

>100_bases
ACCAGCTCGTGCATGTTTGTCGACAGCCTGGAGTTGAAAATCCATTGTTTAAGCCTTAATCTTGGATATAATGGCGTAAT
CATTTTTTAGGAAGTTTGGA

Downstream 100 bases:

>100_bases
AGGAATGCGAGAAATTTTAATCCCTTTAAAAGAAAAAAGCTATAAAGTGTTTTTGGGGGAATTGCCCGCCATTGAATTGA
AACAAAAAGCGCTCATTGTG

Product: hypothetical protein

Products: NA

Alternate protein names: TrkA-C; TrkA-C Domain-Containing Protein; TrkA Domain Protein; Trka-C Domain Protein; TrkA-C Domain Protein

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MELKKIALILDGIVAKNFLDLVLRHYSSHNFYIVVVKDENLIPKNYPSTFAFYCFDATSSFRLLQALDDEVSDLFLIMQD
AKEQRIIHKIIQTHFKRMRVVLSVKREGENENDEKHESEKLVLIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIGV
PFGSIFAYRHVGSIRQKEYKIVGLYRNDVFLLATKSLVIQPRDILLVVGNPEILNAVYLQVKSHVGQFPAPFGKSIYLYI
DMRSQSKKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETEGIEVNFDFYGKSFIQKLHEDHQKKMGLIM
VGRELFLPKKHRKALYKTATPVYKTNAFGLSKVSQSVVVLNESLDINEDMSSVIFDVSMQMDLSLLLYDFDPNKRYKNEI
VNHYENLANALNRKIKIFQTDTKNPIMHLNSLKDPILHFIPFEACITKTRFLWFLSTKVEKLAFLSDDNPQIFIPVAE

Sequences:

>Translated_478_residues
MELKKIALILDGIVAKNFLDLVLRHYSSHNFYIVVVKDENLIPKNYPSTFAFYCFDATSSFRLLQALDDEVSDLFLIMQD
AKEQRIIHKIIQTHFKRMRVVLSVKREGENENDEKHESEKLVLIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIGV
PFGSIFAYRHVGSIRQKEYKIVGLYRNDVFLLATKSLVIQPRDILLVVGNPEILNAVYLQVKSHVGQFPAPFGKSIYLYI
DMRSQSKKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETEGIEVNFDFYGKSFIQKLHEDHQKKMGLIM
VGRELFLPKKHRKALYKTATPVYKTNAFGLSKVSQSVVVLNESLDINEDMSSVIFDVSMQMDLSLLLYDFDPNKRYKNEI
VNHYENLANALNRKIKIFQTDTKNPIMHLNSLKDPILHFIPFEACITKTRFLWFLSTKVEKLAFLSDDNPQIFIPVAE
>Mature_478_residues
MELKKIALILDGIVAKNFLDLVLRHYSSHNFYIVVVKDENLIPKNYPSTFAFYCFDATSSFRLLQALDDEVSDLFLIMQD
AKEQRIIHKIIQTHFKRMRVVLSVKREGENENDEKHESEKLVLIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIGV
PFGSIFAYRHVGSIRQKEYKIVGLYRNDVFLLATKSLVIQPRDILLVVGNPEILNAVYLQVKSHVGQFPAPFGKSIYLYI
DMRSQSKKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETEGIEVNFDFYGKSFIQKLHEDHQKKMGLIM
VGRELFLPKKHRKALYKTATPVYKTNAFGLSKVSQSVVVLNESLDINEDMSSVIFDVSMQMDLSLLLYDFDPNKRYKNEI
VNHYENLANALNRKIKIFQTDTKNPIMHLNSLKDPILHFIPFEACITKTRFLWFLSTKVEKLAFLSDDNPQIFIPVAE

Specific function: Unknown

COG id: COG3400

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55515; Mature: 55515

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKKIALILDGIVAKNFLDLVLRHYSSHNFYIVVVKDENLIPKNYPSTFAFYCFDATSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCH
FRLLQALDDEVSDLFLIMQDAKEQRIIHKIIQTHFKRMRVVLSVKREGENENDEKHESEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LVLIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIGVPFGSIFAYRHVGSIRQKEYK
EEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEE
IVGLYRNDVFLLATKSLVIQPRDILLVVGNPEILNAVYLQVKSHVGQFPAPFGKSIYLYI
EEEEEECCEEEEEECEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
DMRSQSKKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETEGIEVNFDFY
EECCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHEEEECCEEEEEECC
GKSFIQKLHEDHQKKMGLIMVGRELFLPKKHRKALYKTATPVYKTNAFGLSKVSQSVVVL
CHHHHHHHHHHHHHHCCEEEECHHHCCCCHHHHHHHHCCCCCEECCCCCHHHHCCEEEEE
NESLDINEDMSSVIFDVSMQMDLSLLLYDFDPNKRYKNEIVNHYENLANALNRKIKIFQT
ECCCCCCCCHHHHHEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE
DTKNPIMHLNSLKDPILHFIPFEACITKTRFLWFLSTKVEKLAFLSDDNPQIFIPVAE
CCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHEEEEHHHHHHHEEECCCCCEEEEEECC
>Mature Secondary Structure
MELKKIALILDGIVAKNFLDLVLRHYSSHNFYIVVVKDENLIPKNYPSTFAFYCFDATSS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECCCCH
FRLLQALDDEVSDLFLIMQDAKEQRIIHKIIQTHFKRMRVVLSVKREGENENDEKHESEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LVLIDEFEVLANKFISRLPNIPSTPREFGLGKGEIMEIGVPFGSIFAYRHVGSIRQKEYK
EEEEEHHHHHHHHHHHHCCCCCCCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCEE
IVGLYRNDVFLLATKSLVIQPRDILLVVGNPEILNAVYLQVKSHVGQFPAPFGKSIYLYI
EEEEEECCEEEEEECEEEECCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
DMRSQSKKAMMRDVYQALFLHKHLKSYKLYIQVLHPTSPKFYHKFLALETEGIEVNFDFY
EECCCHHHHHHHHHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHEEEECCEEEEEECC
GKSFIQKLHEDHQKKMGLIMVGRELFLPKKHRKALYKTATPVYKTNAFGLSKVSQSVVVL
CHHHHHHHHHHHHHHCCEEEECHHHCCCCHHHHHHHHCCCCCEECCCCCHHHHCCEEEEE
NESLDINEDMSSVIFDVSMQMDLSLLLYDFDPNKRYKNEIVNHYENLANALNRKIKIFQT
ECCCCCCCCHHHHHEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE
DTKNPIMHLNSLKDPILHFIPFEACITKTRFLWFLSTKVEKLAFLSDDNPQIFIPVAE
CCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHEEEEHHHHHHHEEECCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA