Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
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Accession | NC_008229 |
Length | 1,553,927 |
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The map label for this gene is 109947096
Identifier: 109947096
GI number: 109947096
Start: 438931
End: 439464
Strand: Direct
Name: 109947096
Synonym: Hac_0499
Alternate gene names: NA
Gene position: 438931-439464 (Clockwise)
Preceding gene: 109947095
Following gene: 109947097
Centisome position: 28.25
GC content: 34.08
Gene sequence:
>534_bases ATGGCAGACAAATCGGTAAATGAACCGATATTAAATATCCCTAAAGAAAACTACTCCTTTATTAAAAAATTCATTGGTTG TTCTAATGATGAAGATTTTATTACTCTAGACACTTGGGTGGATAATTCTCAAGTGGGCGAAGGGGATTTGGTGTTGCAAA TGGATATTGAGGGGGGCGAGTATCTTTCCCTTATCAATGCGAGTGATGGATTATTGAATCGTTTTAGAATTATTGCTTTA GAAATCCATTGGTTAAAATATTTATGGGATAAAAGCTATTTTGAAATGGTTCAAAGCACTTTAAATAAAATTTTAAAAAC GCATTATTGCGTGCATTTGCACCCTTGTAATTACGAAAGTGTTTTTACCTATAAAGATTTGGATATCGTTGAAGTGCTAG AATGCACTTTTATTAGAAAGGATAGGGTAAAAAATATTTTGGGCTATTGCACTGATTTTCCGCACCCATTAGACACGGAT GATGCGGTTGAAAATCCTACACTAGTTTTACCTAGAAATTGGTATGGAGGCTAA
Upstream 100 bases:
>100_bases GGATTAAAGCGCTCTTTTCTCCAGGTGTGGGTCACACAAGTGCGTTTGAAGAAGATTTTTATCGTCAATGCAGGCTTGCA AACTCTAATGATATATATAT
Downstream 100 bases:
>100_bases AGCCTTTCCATATTGAAATGCTTGAAAATGCACATTTCAGGCAAGCAAACATCCACACGAAGTATTTGGTATTGTCTCTT AAAGCTCAAACCAACCCAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MADKSVNEPILNIPKENYSFIKKFIGCSNDEDFITLDTWVDNSQVGEGDLVLQMDIEGGEYLSLINASDGLLNRFRIIAL EIHWLKYLWDKSYFEMVQSTLNKILKTHYCVHLHPCNYESVFTYKDLDIVEVLECTFIRKDRVKNILGYCTDFPHPLDTD DAVENPTLVLPRNWYGG
Sequences:
>Translated_177_residues MADKSVNEPILNIPKENYSFIKKFIGCSNDEDFITLDTWVDNSQVGEGDLVLQMDIEGGEYLSLINASDGLLNRFRIIAL EIHWLKYLWDKSYFEMVQSTLNKILKTHYCVHLHPCNYESVFTYKDLDIVEVLECTFIRKDRVKNILGYCTDFPHPLDTD DAVENPTLVLPRNWYGG >Mature_176_residues ADKSVNEPILNIPKENYSFIKKFIGCSNDEDFITLDTWVDNSQVGEGDLVLQMDIEGGEYLSLINASDGLLNRFRIIALE IHWLKYLWDKSYFEMVQSTLNKILKTHYCVHLHPCNYESVFTYKDLDIVEVLECTFIRKDRVKNILGYCTDFPHPLDTDD AVENPTLVLPRNWYGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20548; Mature: 20416
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKSVNEPILNIPKENYSFIKKFIGCSNDEDFITLDTWVDNSQVGEGDLVLQMDIEGGE CCCCCCCCCHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCC YLSLINASDGLLNRFRIIALEIHWLKYLWDKSYFEMVQSTLNKILKTHYCVHLHPCNYES EEEEEECCCCHHHHEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEEECCCCCC VFTYKDLDIVEVLECTFIRKDRVKNILGYCTDFPHPLDTDDAVENPTLVLPRNWYGG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure ADKSVNEPILNIPKENYSFIKKFIGCSNDEDFITLDTWVDNSQVGEGDLVLQMDIEGGE CCCCCCCCHHCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCC YLSLINASDGLLNRFRIIALEIHWLKYLWDKSYFEMVQSTLNKILKTHYCVHLHPCNYES EEEEEECCCCHHHHEEEEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHCCEEEEECCCCCC VFTYKDLDIVEVLECTFIRKDRVKNILGYCTDFPHPLDTDDAVENPTLVLPRNWYGG EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA