| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is yeeJ [C]
Identifier: 108812490
GI number: 108812490
Start: 2609636
End: 2611708
Strand: Reverse
Name: yeeJ [C]
Synonym: YPN_2329
Alternate gene names: 108812490
Gene position: 2611708-2609636 (Counterclockwise)
Preceding gene: 108812491
Following gene: 108812486
Centisome position: 57.6
GC content: 50.17
Gene sequence:
>2073_bases ATGCCGGAGGATATTTATTTTGGTAAAGATAATCTGCAACGCAACCCTTATGCCGTGACTGCCGGGATCAATTACACCCC CGTGCCTCTACTCACTGTCGGGGTAGATCAGCGTATGGGGAAAAGCAGTAAGCATGAAACACAGTGGAACCTCCAAATGA ACTATCGCCTGGGCGAGAGTTTTCAGTCGCAACTTAGCCCTTCAGCGGTGGCGGGAACACGTCTACTGGCTGAGAGCCGC TATAACCTTGTCGATCGTAACAATAATATCGTGTTGGAGTATCAGAAACAGCAGGTGGTTAAACTGACATTATCGCCAGC AACTATCTCCGGCCTGCCGGGTCAGGTTTATCAGGTGAACGCACAAGTACAAGGGGCATCTGCTGTAAGGGAAATTGTCT GGAGTGATGCCGAACTGATTGCCGCTGGCGGCACATTAACACCACTGAGTACCACACAATTCAACTTGGTTTTACCGCCT TATAAACGCACAGCACAAGTGAGTCGGGTAACGGACGACCTGACAGCCAACTTTTATTCGCTTAGTGCGCTCGCGGTTGA TCACCAAGGAAACAGATCTAACTCATTCACATTGAGCGTCACCGTTCAGCAGCCTCAGTTGACATTAACGGCGGCCGTCA TTGGTGATGGCGCACCGGCTAGTGGGAAAACTGCAATCACCGTTGAGTTCACCGTTGCTGATTTTGAGGGGAAACCCTTA GCCGGGCAGGAGGTGGTGATAACCACCAATAATGGTGCGCTACCGAATAAAATCACGGAAAAGACAGATGCAAATGGCGT CGCGCGCATTGCATTAACCAATACGACAGATGGCGTGACGGTAGTCACAGCAGAAGTGGAGGGGCAACGGCAAAGTGTTG ATACCCACTTTGTTAAGGGTACTATCGCGGCGGATAAATCCACTCTGGCTGCGGTACCGACATCTATCATCGCTGATGGT CTAATGGCTTCAACCATCACGTTGGAGTTGAAGGATACCTATGGGGACCCGCAGGCTGGCGCGAATGTGGCTTTTGACAC AACCTTAGGCAATATGGGCGTTATCACGGATCACAATGACGGCACTTATAGCGCACCATTGACCAGTACCACGTTGGGGG TAGCAACAGTAACGGTGAAAGTGGATGGGGCTGCGTTCAGTGTGCCGAGTGTGACGGTTAATTTCACGGCAGATCCTATT CCAGATGCTGGCCGCTCCAGTTTCACCGTCTCCACACCGGATATCTTGGCTGATGGCACGATGAGTTCCACATTATCCTT TGTCCCTGTCGATAAGAATGGCCATTTTATCAGTGGGATGCAGGGCTTGAGTTTTACTCAAAACGGTGTGCCGGTGAGTA TTAGCCCCATTACCGAGCAGCCAGATAGCTATACCGCGACGGTGGTTGGGAATACCGCCGGTGATGTCACAATCACGCCT CAGGTTGATACCCTGATACTGAGTACATTGCAGAAAAAAATATCCCTATTCCCGGTACCTACGCTGACCGGTATTCTGGT TAACGGGCAAAATTTCGCTACGGATAAAGGGTTCCCGAAAACGATCTTTAAAAACGCCACATTCCAGTTACAGATGGATA ACGATGTTGCTAATAATACTCAGTATGAGTGGTCGTCGTCATTCACACCCAATGTATCGGTTAACGATCAGGGTCAGGTG ACGATTACCTACCAAACCTATAGCGAAGTGGCTGTGACGGCGAAAAGTAAAAAATTCCCAAGTTATTCGGTGAGTTATCG GTTCTACCCAAATCGGTGGATATACGATGGCGGCACTTCGCTGGTATCGAGTATCGAGGCCAGCAGACAATGCCAAGGTT CAGATATGTCTGCGGTTCTTGAATCCTCACGTGCAACCAACGGAACGCGTGCGCCTGACGGGACATTGTGGGGCGAGTGG GGGAGCTTGACCGCGTATAGTTCTGATTGGCAATCTGGCGAATATTGGGTCAAAAGGACCAGCACGGATTTTGAAACCAT GAATATGAACACTGGCGTGCTGCAACCAGGGCCTGCATACTTGGCGTTCCCGCTCTGTGCGCTGTCAATATAA
Upstream 100 bases:
>100_bases GCCGTAAGTAATCCATAGATGCAAATGTCAGATCGCGATGCGCCTGTTAGGGCGCGGCTGGTAACAGAGCCTTATAGGCG CATATGAAAAACCTCCGGCT
Downstream 100 bases:
>100_bases CCAGATAACAGATAGCAATAAGAACAGTTTAATGAGCTGATTATTTGGGGCGCGAATGGGAGTCCGGCAATCCTAGACTC GTCCTATAAGCAGCAAACGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 690; Mature: 689
Protein sequence:
>690_residues MPEDIYFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESR YNLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVNAQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPP YKRTAQVSRVTDDLTANFYSLSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPASGKTAITVEFTVADFEGKPL AGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADG LMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPI PDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITP QVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQV TITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTSLVSSIEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEW GSLTAYSSDWQSGEYWVKRTSTDFETMNMNTGVLQPGPAYLAFPLCALSI
Sequences:
>Translated_690_residues MPEDIYFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESR YNLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVNAQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPP YKRTAQVSRVTDDLTANFYSLSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPASGKTAITVEFTVADFEGKPL AGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADG LMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPI PDAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITP QVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQV TITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTSLVSSIEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEW GSLTAYSSDWQSGEYWVKRTSTDFETMNMNTGVLQPGPAYLAFPLCALSI >Mature_689_residues PEDIYFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGESFQSQLSPSAVAGTRLLAESRY NLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVNAQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPPY KRTAQVSRVTDDLTANFYSLSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPASGKTAITVEFTVADFEGKPLA GQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKGTIAADKSTLAAVPTSIIADGL MASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHNDGTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIP DAGRSSFTVSTPDILADGTMSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITPQ VDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNTQYEWSSSFTPNVSVNDQGQVT ITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTSLVSSIEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWG SLTAYSSDWQSGEYWVKRTSTDFETMNMNTGVLQPGPAYLAFPLCALSI
Specific function: Invasin is a protein that allows enteric bacteria to penetrate cultured mammalian cells. The entry of invasin in the cell is mediated by binding several beta-1 chain integrins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell surface [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 Big-1 (bacterial Ig-like domain 1) domains [H]
Homologues:
Organism=Escherichia coli, GI145693153, Length=244, Percent_Identity=36.8852459016393, Blast_Score=139, Evalue=6e-34, Organism=Escherichia coli, GI145693120, Length=193, Percent_Identity=29.0155440414508, Blast_Score=89, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003344 - InterPro: IPR016186 - InterPro: IPR016187 - InterPro: IPR003535 - InterPro: IPR013117 - InterPro: IPR008964 - InterPro: IPR015217 [H]
Pfam domain/function: PF02369 Big_1; PF07979 Intimin_C; PF09134 Invasin_D3 [H]
EC number: NA
Molecular weight: Translated: 73659; Mature: 73528
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: PS51127 BIG1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEDIYFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGES CCCCEEECCCCCCCCCEEEECCCCCCCCEEEEECCHHHCCCCCCCCEEEEEEEEEEECHH FQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVN HHHHCCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEECCCEECCCCCCEEEEE AQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPPYKRTAQVSRVTDDLTANFYS EEECCHHHHHHHHCCCCEEEEECCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEE LSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPASGKTAITVEFTVADFEGKPL EEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCC AGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKG CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEE TIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHND EEECCCCHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCC GTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGT CEEECCCCCCEEEEEEEEEEECCCEEECCEEEEEEECCCCCCCCCCCEEECCCCCEECCC MSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITP HHCCEEEEEECCCCCEEECCCCCCEECCCCCEEEECCCCCCCCEEEEEEECCCCCEEECC QVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNT CHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCC QYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTS CEEECCCCCCCEEECCCCCEEEEEEECCEEEEEECCCCCCCEEEEEEECCCCEEECCCHH LVSSIEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKRT HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEEEEEC STDFETMNMNTGVLQPGPAYLAFPLCALSI CCCCEEEECCCCCCCCCCCHHEEEEHEECC >Mature Secondary Structure PEDIYFGKDNLQRNPYAVTAGINYTPVPLLTVGVDQRMGKSSKHETQWNLQMNYRLGES CCCEEECCCCCCCCCEEEECCCCCCCCEEEEECCHHHCCCCCCCCEEEEEEEEEEECHH FQSQLSPSAVAGTRLLAESRYNLVDRNNNIVLEYQKQQVVKLTLSPATISGLPGQVYQVN HHHHCCCCHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEECCCEECCCCCCEEEEE AQVQGASAVREIVWSDAELIAAGGTLTPLSTTQFNLVLPPYKRTAQVSRVTDDLTANFYS EEECCHHHHHHHHCCCCEEEEECCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEE LSALAVDHQGNRSNSFTLSVTVQQPQLTLTAAVIGDGAPASGKTAITVEFTVADFEGKPL EEEEEEECCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCCCC AGQEVVITTNNGALPNKITEKTDANGVARIALTNTTDGVTVVTAEVEGQRQSVDTHFVKG CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCEEEEEE TIAADKSTLAAVPTSIIADGLMASTITLELKDTYGDPQAGANVAFDTTLGNMGVITDHND EEECCCCHHHHCCHHHHHCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCC GTYSAPLTSTTLGVATVTVKVDGAAFSVPSVTVNFTADPIPDAGRSSFTVSTPDILADGT CEEECCCCCCEEEEEEEEEEECCCEEECCEEEEEEECCCCCCCCCCCEEECCCCCEECCC MSSTLSFVPVDKNGHFISGMQGLSFTQNGVPVSISPITEQPDSYTATVVGNTAGDVTITP HHCCEEEEEECCCCCEEECCCCCCEECCCCCEEEECCCCCCCCEEEEEEECCCCCEEECC QVDTLILSTLQKKISLFPVPTLTGILVNGQNFATDKGFPKTIFKNATFQLQMDNDVANNT CHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCHHHHCCCEEEEEECCCCCCCC QYEWSSSFTPNVSVNDQGQVTITYQTYSEVAVTAKSKKFPSYSVSYRFYPNRWIYDGGTS CEEECCCCCCCEEECCCCCEEEEEEECCEEEEEECCCCCCCEEEEEEECCCCEEECCCHH LVSSIEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKRT HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCEECCCCCEEEECCCCCCCCEEEEEC STDFETMNMNTGVLQPGPAYLAFPLCALSI CCCCEEEECCCCCCCCCCCHHEEEEHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3304658; 1693333; 10514372 [H]