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The map label for this gene is flgD [H]

Identifier: 108812484

GI number: 108812484

Start: 2606082

End: 2606759

Strand: Reverse

Name: flgD [H]

Synonym: YPN_2323

Alternate gene names: 108812484

Gene position: 2606759-2606082 (Counterclockwise)

Preceding gene: 108812485

Following gene: 108812483

Centisome position: 57.49

GC content: 52.95

Gene sequence:

>678_bases
ATGGCCATTACCAATTCCCTGACGGAAAGTGATTACGGCACGACCGGGACCAGTTCCACTACCGGCAGCAGTAGTCAAGA
TCTGCAAAACCGCTTCCTGACGTTATTAGTGGCGCAGTTGAAAAACCAAGACCCTACTAACCCAATGGAAAACAACGAGT
TGACCACACAGTTGGCGCAAATCAACACCGTGAGTGGCATTGAAAAGCTGAATACGACCCTCGGTGCTATTACCGGTCAA
ATTGACAGCAGCCAATCTCTGTACGCCACCAGCCTGATTGGTCGAGGCGTTATGGTCCCTGGTACCAATATATTTACGGG
CAGCACCGATGGCACGGTCAGCACCACGCCTTTTGGCCTCGAATTGCAACGACCTGCGGATAAAGTGACCGCCACCATTA
GCGATAGCAATGGTCAGGTGGTACGGACCATTGAGATCGGTGGTTTAAACGCAGGTGTTCACTCCTTTACCTGGGATGGC
TCACTGGACGCGGGCGGTAATGCGCCAGATGGTGCTTATACCGTAGCCATTACTGCCAGCAATGGTGGGGAATCACTGGT
CGCAACGCCGTTGAACTACGCCATTGTCAACGGTGTAACCCGCGGCGCGGATGGCTCCAAACTGGACTTGGGTCTGGCAG
GAACCATCACGCTGGATGAAGTGCGCCAGATTTTATAA

Upstream 100 bases:

>100_bases
CTGCATCACGTAGCTACCAGGCAAACGTTGAAGTCCTGAATACCACCAAATCCCTGATGCTCAAAACGCTGACACTGGGT
CAATAACAGGAGCCAGCATA

Downstream 100 bases:

>100_bases
GTCTGTTGTTAGGCTTTCATAGAACTGTTAGGCCTTCATAGAACCGTTATGCCGCCGTAGATCAACTATGCGGTGATAAA
GCAGCAGACAGGACGGTAAT

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MAITNSLTESDYGTTGTSSTTGSSSQDLQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQ
IDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDG
SLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL

Sequences:

>Translated_225_residues
MAITNSLTESDYGTTGTSSTTGSSSQDLQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQ
IDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDG
SLDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
>Mature_224_residues
AITNSLTESDYGTTGTSSTTGSSSQDLQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQINTVSGIEKLNTTLGAITGQI
DSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGLELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDGS
LDAGGNAPDGAYTVAITASNGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=202, Percent_Identity=72.2772277227723, Blast_Score=285, Evalue=2e-78,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23144; Mature: 23013

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITNSLTESDYGTTGTSSTTGSSSQDLQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQ
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
INTVSGIEKLNTTLGAITGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGL
HHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCEECCCCEEEECCCCCEEECCCCCE
ELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITAS
EECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEC
NGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
CCCCEEEECCCCEEEECCEECCCCCCEEEECEEEEEEHHHHHHHC
>Mature Secondary Structure 
AITNSLTESDYGTTGTSSTTGSSSQDLQNRFLTLLVAQLKNQDPTNPMENNELTTQLAQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
INTVSGIEKLNTTLGAITGQIDSSQSLYATSLIGRGVMVPGTNIFTGSTDGTVSTTPFGL
HHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCEECCCCEEEECCCCCEEECCCCCE
ELQRPADKVTATISDSNGQVVRTIEIGGLNAGVHSFTWDGSLDAGGNAPDGAYTVAITAS
EECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEEEC
NGGESLVATPLNYAIVNGVTRGADGSKLDLGLAGTITLDEVRQIL
CCCCEEEECCCCEEEECCEECCCCCCEEEECEEEEEEHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]