Click here to switch to the map view.

The map label for this gene is flgH

Identifier: 108812480

GI number: 108812480

Start: 2602431

End: 2603120

Strand: Reverse

Name: flgH

Synonym: YPN_2319

Alternate gene names: 108812480

Gene position: 2603120-2602431 (Counterclockwise)

Preceding gene: 108812481

Following gene: 108812479

Centisome position: 57.41

GC content: 52.17

Gene sequence:

>690_bases
ATGTATTTGAGAAAAATAAGTGCGCCGTTGATGACAATGCTGCTACTCAATGGTTGCGCGTATATTCCGCATAAACCACT
GGTGGATGGCACCACGTCTGCGCAGCCCGCACCGGCCAGTGCGCCGTTGCCGAATGGCTCTATTTTTCAGACCGTACAGC
CGATGAATTATGGCTATCAACCCCTATTTGAAGACCGTCGCCCACGTAATATCGGTGACACGCTGACCATTACCTTGCAG
GAAAATGTCAGTGCCAGCAAAAGTTCGTCAGCCAATGCCAGCCGTAATGGGACCAGCTCATTTGGTGTGACGACCGCCCC
CCGCTATTTGGACGGATTATTGGGTAATGGGCGCGCCGATATGGAAATCACGGGCGACAATACTTTTGGCGGCAAGGGGG
GGGCGAATGCCAATAACACCTTCAGCGGCACGATCACCGTGACGGTCGATCAAGTACTGGCTAACGGTAACTTGCATGTG
GTGGGTGAAAAACAGATTGCTATCAATCAGGGGACCGAATTTATTCGCTTCTCTGGGGTAGTCAACCCACGCACCATCAG
CGGCAGCAATAGCGTGACCTCAACACAGGTTGCCGATGCGCGCATCGAGTATGTGGGGAATGGGTATATCAATGAAGCGC
AAACCATGGGCTGGTTACAGCGGTTCTTCCTTAATGTTTCGCCGTACTAA

Upstream 100 bases:

>100_bases
AATAGGTCTCTGGGCAAGTTTGCCAACCTCTTACTGGTTATAGGATTGATAATCAAAGATGGATAGCGCGCCGTTCAGAA
CGTCAGGTGGAGTGAAAGGG

Downstream 100 bases:

>100_bases
GAAGAGGCGTCCAAATGCGTAAACAGTCACTTGTCACTCTACTTATGGTCCTGCTCTCGCTGGTTTGGCTACCGGCCTCG
GCGGAGCGTATCCGCGATTT

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein 1

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MYLRKISAPLMTMLLLNGCAYIPHKPLVDGTTSAQPAPASAPLPNGSIFQTVQPMNYGYQPLFEDRRPRNIGDTLTITLQ
ENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRADMEITGDNTFGGKGGANANNTFSGTITVTVDQVLANGNLHV
VGEKQIAINQGTEFIRFSGVVNPRTISGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY

Sequences:

>Translated_229_residues
MYLRKISAPLMTMLLLNGCAYIPHKPLVDGTTSAQPAPASAPLPNGSIFQTVQPMNYGYQPLFEDRRPRNIGDTLTITLQ
ENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRADMEITGDNTFGGKGGANANNTFSGTITVTVDQVLANGNLHV
VGEKQIAINQGTEFIRFSGVVNPRTISGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY
>Mature_229_residues
MYLRKISAPLMTMLLLNGCAYIPHKPLVDGTTSAQPAPASAPLPNGSIFQTVQPMNYGYQPLFEDRRPRNIGDTLTITLQ
ENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRADMEITGDNTFGGKGGANANNTFSGTITVTVDQVLANGNLHV
VGEKQIAINQGTEFIRFSGVVNPRTISGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=218, Percent_Identity=80.7339449541284, Blast_Score=343, Evalue=5e-96,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH1_YERPS (Q66BT9)

Other databases:

- EMBL:   BX936398
- RefSeq:   YP_070205.1
- ProteinModelPortal:   Q66BT9
- GeneID:   2955573
- GenomeReviews:   BX936398_GR
- KEGG:   yps:YPTB1678
- HOGENOM:   HBG507455
- OMA:   IAGEKQI
- ProtClustDB:   PRK00249
- BioCyc:   YPSE273123:YPTB1678-MONOMER
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 24445; Mature: 24445

Theoretical pI: Translated: 8.41; Mature: 8.41

Prosite motif: PS51257 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLRKISAPLMTMLLLNGCAYIPHKPLVDGTTSAQPAPASAPLPNGSIFQTVQPMNYGYQ
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
PLFEDRRPRNIGDTLTITLQENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRAD
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
MEITGDNTFGGKGGANANNTFSGTITVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGV
EEEECCCCCCCCCCCCCCCEEEEEEEEEEEHHHHCCCEEEEECCEEEECCCCCEEEEECC
VNPRTISGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY
CCCEEECCCCCCCEEEHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MYLRKISAPLMTMLLLNGCAYIPHKPLVDGTTSAQPAPASAPLPNGSIFQTVQPMNYGYQ
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCC
PLFEDRRPRNIGDTLTITLQENVSASKSSSANASRNGTSSFGVTTAPRYLDGLLGNGRAD
CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
MEITGDNTFGGKGGANANNTFSGTITVTVDQVLANGNLHVVGEKQIAINQGTEFIRFSGV
EEEECCCCCCCCCCCCCCCEEEEEEEEEEEHHHHCCCEEEEECCEEEECCCCCEEEEECC
VNPRTISGSNSVTSTQVADARIEYVGNGYINEAQTMGWLQRFFLNVSPY
CCCEEECCCCCCCEEEHHCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA