| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
Click here to switch to the map view.
The map label for this gene is 108812240
Identifier: 108812240
GI number: 108812240
Start: 2347149
End: 2347553
Strand: Reverse
Name: 108812240
Synonym: YPN_2078
Alternate gene names: NA
Gene position: 2347553-2347149 (Counterclockwise)
Preceding gene: 108812241
Following gene: 108812239
Centisome position: 51.77
GC content: 34.07
Gene sequence:
>405_bases ATGAATAAAACAACAGTGAAAGCAGAGTTTTCCATTTGCGGTGATATCTTTGATCCCAATGAGATAACTACTTTACTACA GATAGAACCTATGGAGGTTCATCTAAAAGGTGTCATCAGCGGAACGAGAAAAAGACCGAGCACAGAGACTAGCTGGTCAA TCTGTACAGAGAAAGAAGAGTCCTATGATGTAGATGAGCAAACAAGAAAATTGTTGTCTTCATTAAAATGTAAAATTGAT GCTTTGGAGGAAATAAAAGAGAAATATAGTGTTACGTTCATTTTTTCTCTTTTGATCGAAATAGAGAATGGGGAAAAACC ATCTATCTATTGGTCAGCAGAAACAAATCGTTTTTTGGGTAGTATTGGAGCTGAAAGTTCTATTGATTTATATATTTATA GTTAA
Upstream 100 bases:
>100_bases TTATGACATTTATGTTGATAAAGATAACGGACAGTTGTGGATTTTCAGAAAAGGTGAAGGTATTCCGACTGGCGAATTTA TTAATAAGTAGGATCGTTAC
Downstream 100 bases:
>100_bases ACTCAGTCGTGGAGAATAATGCGCTGAGTGACATAATCGAGAACAAAGTCTTTGGTGTGTCACAGGAAGAGAAGTACCAG AACGCGCAGATACAGGTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MNKTTVKAEFSICGDIFDPNEITTLLQIEPMEVHLKGVISGTRKRPSTETSWSICTEKEESYDVDEQTRKLLSSLKCKID ALEEIKEKYSVTFIFSLLIEIENGEKPSIYWSAETNRFLGSIGAESSIDLYIYS
Sequences:
>Translated_134_residues MNKTTVKAEFSICGDIFDPNEITTLLQIEPMEVHLKGVISGTRKRPSTETSWSICTEKEESYDVDEQTRKLLSSLKCKID ALEEIKEKYSVTFIFSLLIEIENGEKPSIYWSAETNRFLGSIGAESSIDLYIYS >Mature_134_residues MNKTTVKAEFSICGDIFDPNEITTLLQIEPMEVHLKGVISGTRKRPSTETSWSICTEKEESYDVDEQTRKLLSSLKCKID ALEEIKEKYSVTFIFSLLIEIENGEKPSIYWSAETNRFLGSIGAESSIDLYIYS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15242; Mature: 15242
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKTTVKAEFSICGDIFDPNEITTLLQIEPMEVHLKGVISGTRKRPSTETSWSICTEKEE CCCCEEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEECCCCC SYDVDEQTRKLLSSLKCKIDALEEIKEKYSVTFIFSLLIEIENGEKPSIYWSAETNRFLG CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEHEEEEECCCCCCEEEEECCCCCHHC SIGAESSIDLYIYS CCCCCCCEEEEEEC >Mature Secondary Structure MNKTTVKAEFSICGDIFDPNEITTLLQIEPMEVHLKGVISGTRKRPSTETSWSICTEKEE CCCCEEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEECCCCC SYDVDEQTRKLLSSLKCKIDALEEIKEKYSVTFIFSLLIEIENGEKPSIYWSAETNRFLG CCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEHEEEEECCCCCCEEEEECCCCCHHC SIGAESSIDLYIYS CCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA