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The map label for this gene is araQ [H]

Identifier: 108812231

GI number: 108812231

Start: 2338538

End: 2339362

Strand: Reverse

Name: araQ [H]

Synonym: YPN_2069

Alternate gene names: 108812231

Gene position: 2339362-2338538 (Counterclockwise)

Preceding gene: 108812232

Following gene: 108812230

Centisome position: 51.59

GC content: 41.33

Gene sequence:

>825_bases
ATGAAAAAAAACATCAACAGTTTAATTATCCATCTGGTTATGTTTTCTCTGGCGCTTTCGTGGCTCTATCCCTATATCTG
GATGGTGCTTTCTTCCTTTAAACAGTCTGCCGATATTTATACTACCGGGCTGTTTGGTAGCGCTTACTCACTCGATAATT
ACCGTTTTTTGTTTGAAAACAGTGGCCGGGTGGAAAAACCTTTTTTAAAGACGCTATTTAACTCACTCTTTATTTCAACA
GTAGTGACGGTAGCCGTTACCCTTAGCTCCATGTTTATTGGATTTGCGCTGGCAAAAATGCAATTTAAAGGCCAGTCCCT
GTTTAGGAATTTACTGTTTTTACAAATGGTTTTCCCTGCGTCGATGTTTATCATCCCGCAATTCGTTTTAGTCAGAGAAC
TGGGGTTATTAAACACCTATAGCGCCATGATTGTTCCTTTTCTCATGAGTTCTTGGGGGATCTTTATGATTTCACAGAGC
TTCCAGGGGACGCCGAATGATTATATTCATGCGGCCAAAATTGATAATGCTAGTCTGTGGCAAATTATGATTTACCTGAT
GATGCCGCTGAATAAAGCAATTATCGCCATTGTGGCATTGTTTACCTTTGTCGGCACATGGGACAACTTCTTATGGCCAC
TGATTGTTATCCAGGATGAAAGCAAAATGCCGCTCTCGGTATTACTGGCCACATTCAGCAAATCTTATGGCGTTTATGTT
GGGCCAGTGATCGCTGGTGCGGTCATTCAGACCATCCCGATCGTCGTACTGTTTATTTTATTCCGTAAATATTTCATGCA
GGGCATGTCCCTATCATTAAAGTAG

Upstream 100 bases:

>100_bases
AAGTTGGGCAGCGACCATGTCAATCTTTATCGCGCTCATCAGTTTTGGAATTATCTTGGGTGTCAGAAAATTGCTGGAAA
GAAAGGTAGAGATTGTTTAA

Downstream 100 bases:

>100_bases
GGGGCTGACGCGATGACTGATATGAAATAGTGACGTGAAATGCTTTTATTTGATACTCGAAATTATTTGATAATCGAAAG
TATTTGATACTCGAAAACGC

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFIST
VVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQS
FQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYV
GPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK

Sequences:

>Translated_274_residues
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFIST
VVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQS
FQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYV
GPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>Mature_274_residues
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFIST
VVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQS
FQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYV
GPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=247, Percent_Identity=25.9109311740891, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790464, Length=278, Percent_Identity=23.3812949640288, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787571, Length=253, Percent_Identity=22.5296442687747, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31130; Mature: 31130

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCEEEEECC
SGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCHHHH
QIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCEE
GPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFEN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEECCCCEEEEECC
SGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCHHHH
QIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHHCCCCEE
GPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]