| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812228
Identifier: 108812228
GI number: 108812228
Start: 2335133
End: 2336254
Strand: Reverse
Name: 108812228
Synonym: YPN_2066
Alternate gene names: NA
Gene position: 2336254-2335133 (Counterclockwise)
Preceding gene: 108812229
Following gene: 108812227
Centisome position: 51.52
GC content: 42.96
Gene sequence:
>1122_bases ATGCATATGAAACATAAAAAATATTTACCCCTGTTTCTGATGGCAGGTATCTGTTCTGTTGCTCAAGCGGATAATTCTCC GGATGTGGTAAGCGCTAATAACATGGATAACCGGACTTTTTTTGCCGGTGACAAAATCAGAATAGTAAAAGATGGTGGTG AGACGATAGAAGCTGTCGTAGAACTCAGCGATGATAATATTGGGATTGTGCGCATCCCTAAGGATGAAAAAGCCTATTTC CATGGCAACTGGTTGGCAGAATATAAAATAGAACATTTCCGCAATGAGGGGCGCAGTACTAACTCTCGGCCAGTGCATGA AATTGTCTTTGCTGATGGGCGCGTCAATTTTGGCGATACGGGCTGGAATACCGGTTTTTTACTCAAGCAGGTACGGTTTA CCAGCGACTCACGTAATGAGAGCAATCATAAAGTTGATTTCCGCATGGTAGAAATGGAAATCCGCCCCGCCTGGTCGAAA AGTATCGACAAGCACTGGTTTATGTTCGAAGGGATCTATTTAGGTAAAACAGGCTACGAAAAAAACCGCACGACAGGCGG CGATAACAATATTGGCGGCGATGGTTATGGTTTTCGGCCCTATTACCGCTACCAGGTATCAGATCGCTTAAGTGTCAATA CTGATGTAAAAATGCTGGTAGAAGATAAAGATGCCCGTGGTGCAGATAATGGACGGTTCCAGTTCTACGAAGCACTTGTT AATGTAAATTATCGGGTCGCCGATAATGTGCACGTCGGTATCGAGGTGTTCCGTAAAGAAGGCCAGGACTTTAATCATAA TGGCACCAAAACAGCAAACGTCTTGGAACAGGAACTTCGCCCTTGGGTTGCCTGGAACATGGGTAAAAATAACTTCCTGT TTAAAATGGAACCACAATTAAGACGTATCGGCGGGCAAGATGGTTATAGAGAAACCTCGAAAGCTCAAAAATATATTTTT AACTATAGCTATCCTATCGCCGATAGAGTCTATTTGGTTGCCGAATATTTCTACCGGGTAGAGCATGACAAAAAATTCTG GGATCGTGGCGTACGCGACAATAAAAGCTACAGTGATACCACCACGCATTTTGGCAAGTTAGGAATTAATTATATTTTTT AA
Upstream 100 bases:
>100_bases ATTGCGTTTTTAACTCGATTTATAGAAAAAACCTAATATCAATTAGATTGGGTGGAGTTCCCATTATTTATCGATTGGGA ATACCACCTACTTACATGGA
Downstream 100 bases:
>100_bases GCGGCTATAAATAACTAACTTAGAATAAGAGAAATAATATGAAACTACTAAATACCCTGGTTTGTATCATTGGTTTAACA TCATTTTCTTCCTCTGCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 373
Protein sequence:
>373_residues MHMKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYF HGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSK SIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALV NVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIF NYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
Sequences:
>Translated_373_residues MHMKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYF HGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSK SIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALV NVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIF NYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF >Mature_373_residues MHMKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYF HGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSK SIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALV NVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIF NYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43342; Mature: 43342
Theoretical pI: Translated: 8.68; Mature: 8.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHMKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVV CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCEEEEEECCCCEEEEEE ELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDT EECCCCEEEEEECCCCCEEEECCCCEEHHHHHHHCCCCCCCCCCCEEEEEECCEEECCCC GWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYE CCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCHHCCCCCCEEEEEEEEECCCCCC KNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALV CCCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCEEEEEECCCCCCCCCCCCEEEEHHH NVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQL CCCEEEECCEEEHHHHEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECHHH RRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDT HHCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCH TTHFGKLGINYIF HHHHHHCCEEECC >Mature Secondary Structure MHMKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVV CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEEECCEEEEEECCCCEEEEEE ELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDT EECCCCEEEEEECCCCCEEEECCCCEEHHHHHHHCCCCCCCCCCCEEEEEECCEEECCCC GWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYE CCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCHHCCCCCCEEEEEEEEECCCCCC KNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALV CCCCCCCCCCCCCCCCCCCCEEEEEECCCEECCCCEEEEEECCCCCCCCCCCCEEEEHHH NVNYRVADNVHVGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQL CCCEEEECCEEEHHHHEECCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCEEEEECHHH RRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDT HHCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCH TTHFGKLGINYIF HHHHHHCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA