| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
Click here to switch to the map view.
The map label for this gene is 108812213
Identifier: 108812213
GI number: 108812213
Start: 2315284
End: 2315961
Strand: Reverse
Name: 108812213
Synonym: YPN_2051
Alternate gene names: NA
Gene position: 2315961-2315284 (Counterclockwise)
Preceding gene: 108812215
Following gene: 108812212
Centisome position: 51.07
GC content: 44.4
Gene sequence:
>678_bases GTGGACCGCAGTCCTTCTCTTTTTACGAGTAAAAAGTTTGTCTTCTTCGGTGCAACCTTCTGTTGTCTACTTTGGGGGAG TGCCTATCCGGCAATAAAAAATGGCTATCAATTGTTTAATATTTCGCCTGATGATATTCCCAGTAAGATGGTGTTTGCTG GATATCGTTTTTTATTAGCCGGATTAGTATTGCTGCTTTTTGCGCTCGCCAGTGGTAAGGCAATAGGGCGTCTTAAAAAG GGACAATATCAGCAAATTGCTATTTTGGGATTAACCCAAACGGCGTTGCAGTATGTGTTTTTTTATATCGGTTTGGCTTA CACCACTGGAGTGAAAGGTTCAATCATGAATGCGACGGGGACATTCTTCAGTGTCCTGCTAGCACATTACCTCTATAAAA ATGACCGGTTAACGTTGAATAAAATTATTGGCTGCGCTCTGGGTTTTGTGGGGGTGATGGTGGTCAACGTGGGTTCAGAT TTAATGGACTTCAATTTTTCGCTGCTCGGAGAGGGCTCGGTAGTATTAGCCGCATTTATTCTCTCCGCGGCCAGTATTTA CGGTAAGCGCATTTCGCAGACGATGGATACCACGGTGATGACCGGCTATCAGTTAGCGATTGGTGGGTTGGTGTTAACCC TTGGGGGCTATCTATTTGTATTTGGTCTTGGTCAGTAG
Upstream 100 bases:
>100_bases AGCGGCTTTTTAAGCAAAAAGTGACATCAAACAGGACTTTTCAGTAAGAAGTAGCTATAACGAAACATCATTTCATTTTT TGATTGTAAAGGATGTTCAT
Downstream 100 bases:
>100_bases ACTATTTGGCGCATTCCTCCTTGTTGTAATGCCGCCGTGAGTGGTGCGGTAGCCAGCGGTTTTGATAAGAAGTCTACTGT GGCTCACTTTCTCTGTTCAA
Product: hypothetical protein
Products: NA
Alternate protein names: Exported Membrane Protein; Permease; Integral Membrane; Drug/Metabolite Exporter Family Transporter; Transporter EamA Family
Number of amino acids: Translated: 225; Mature: 225
Protein sequence:
>225_residues MDRSPSLFTSKKFVFFGATFCCLLWGSAYPAIKNGYQLFNISPDDIPSKMVFAGYRFLLAGLVLLLFALASGKAIGRLKK GQYQQIAILGLTQTALQYVFFYIGLAYTTGVKGSIMNATGTFFSVLLAHYLYKNDRLTLNKIIGCALGFVGVMVVNVGSD LMDFNFSLLGEGSVVLAAFILSAASIYGKRISQTMDTTVMTGYQLAIGGLVLTLGGYLFVFGLGQ
Sequences:
>Translated_225_residues MDRSPSLFTSKKFVFFGATFCCLLWGSAYPAIKNGYQLFNISPDDIPSKMVFAGYRFLLAGLVLLLFALASGKAIGRLKK GQYQQIAILGLTQTALQYVFFYIGLAYTTGVKGSIMNATGTFFSVLLAHYLYKNDRLTLNKIIGCALGFVGVMVVNVGSD LMDFNFSLLGEGSVVLAAFILSAASIYGKRISQTMDTTVMTGYQLAIGGLVLTLGGYLFVFGLGQ >Mature_225_residues MDRSPSLFTSKKFVFFGATFCCLLWGSAYPAIKNGYQLFNISPDDIPSKMVFAGYRFLLAGLVLLLFALASGKAIGRLKK GQYQQIAILGLTQTALQYVFFYIGLAYTTGVKGSIMNATGTFFSVLLAHYLYKNDRLTLNKIIGCALGFVGVMVVNVGSD LMDFNFSLLGEGSVVLAAFILSAASIYGKRISQTMDTTVMTGYQLAIGGLVLTLGGYLFVFGLGQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24307; Mature: 24307
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRSPSLFTSKKFVFFGATFCCLLWGSAYPAIKNGYQLFNISPDDIPSKMVFAGYRFLLA CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHH GLVLLLFALASGKAIGRLKKGQYQQIAILGLTQTALQYVFFYIGLAYTTGVKGSIMNATG HHHHHHHHHHCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCHH TFFSVLLAHYLYKNDRLTLNKIIGCALGFVGVMVVNVGSDLMDFNFSLLGEGSVVLAAFI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHEECCCHHHHHHHH LSAASIYGKRISQTMDTTVMTGYQLAIGGLVLTLGGYLFVFGLGQ HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCC >Mature Secondary Structure MDRSPSLFTSKKFVFFGATFCCLLWGSAYPAIKNGYQLFNISPDDIPSKMVFAGYRFLLA CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHH GLVLLLFALASGKAIGRLKKGQYQQIAILGLTQTALQYVFFYIGLAYTTGVKGSIMNATG HHHHHHHHHHCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEECCHH TFFSVLLAHYLYKNDRLTLNKIIGCALGFVGVMVVNVGSDLMDFNFSLLGEGSVVLAAFI HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHEECCCHHHHHHHH LSAASIYGKRISQTMDTTVMTGYQLAIGGLVLTLGGYLFVFGLGQ HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA