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The map label for this gene is bssS [H]

Identifier: 108812202

GI number: 108812202

Start: 2304617

End: 2304913

Strand: Reverse

Name: bssS [H]

Synonym: YPN_2040

Alternate gene names: 108812202

Gene position: 2304913-2304617 (Counterclockwise)

Preceding gene: 108812203

Following gene: 108812199

Centisome position: 50.83

GC content: 42.09

Gene sequence:

>297_bases
ATGGACAGAAATAATGAAGTTATTCAGACTCACCCTGTCGTAGGTTGGGATATCAGTACTGTAGATGTGTACGATGCTAT
GATGATACGTCTTCATTACCTGTCTTCTATGGATCAACCACAAGAAGATGCGTTGGTTGATAGAACGCTCTGGCTTACGA
CCGATGTTGCACGCCAATTAATTAATATATTAGAAGCTGGTATTGCTAAAATTGAGTCATCAGAGAGCCTGTCCATAATT
CTGTGTAACTGCCACCGTATTAAAGGTGATCGCTCAGGCGGTCACCGAACTCGATAA

Upstream 100 bases:

>100_bases
TTCATTGGCGGTTGAGTATACTAAAACAGCTCACTCGGTAATGAGCCGCATTGATCCTCGTTAGTCACTCAAGCCAGTAA
CTACTATATAAGGGGTCTTT

Downstream 100 bases:

>100_bases
TAAAACGGCTCATCGCTAACCGCCAGTTCTGGATCGGCATACTCCATTTTTTTGATGCATCCTTGATCGCCAAATAAACA
ACCTTCCGCACTGAGTCGTC

Product: biofilm formation regulatory protein BssS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MDRNNEVIQTHPVVGWDISTVDVYDAMMIRLHYLSSMDQPQEDALVDRTLWLTTDVARQLINILEAGIAKIESSESLSII
LCNCHRIKGDRSGGHRTR

Sequences:

>Translated_98_residues
MDRNNEVIQTHPVVGWDISTVDVYDAMMIRLHYLSSMDQPQEDALVDRTLWLTTDVARQLINILEAGIAKIESSESLSII
LCNCHRIKGDRSGGHRTR
>Mature_98_residues
MDRNNEVIQTHPVVGWDISTVDVYDAMMIRLHYLSSMDQPQEDALVDRTLWLTTDVARQLINILEAGIAKIESSESLSII
LCNCHRIKGDRSGGHRTR

Specific function: Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. C

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787299, Length=75, Percent_Identity=70.6666666666667, Blast_Score=113, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020273
- ProDom:   PD060858 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11135; Mature: 11135

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRNNEVIQTHPVVGWDISTVDVYDAMMIRLHYLSSMDQPQEDALVDRTLWLTTDVARQL
CCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
INILEAGIAKIESSESLSIILCNCHRIKGDRSGGHRTR
HHHHHHHHHHCCCCCCEEEEEEECEECCCCCCCCCCCC
>Mature Secondary Structure
MDRNNEVIQTHPVVGWDISTVDVYDAMMIRLHYLSSMDQPQEDALVDRTLWLTTDVARQL
CCCCCCEEEECCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
INILEAGIAKIESSESLSIILCNCHRIKGDRSGGHRTR
HHHHHHHHHHCCCCCCEEEEEEECEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]