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The map label for this gene is ybfE [H]

Identifier: 108811285

GI number: 108811285

Start: 1291555

End: 1291842

Strand: Reverse

Name: ybfE [H]

Synonym: YPN_1122

Alternate gene names: 108811285

Gene position: 1291842-1291555 (Counterclockwise)

Preceding gene: 108811286

Following gene: 108811284

Centisome position: 28.49

GC content: 49.65

Gene sequence:

>288_bases
ATGGCAAAAGAACAAACGGATCGCACGACGCTGGATCTGTTCGCAGATGAACGCCGTCCGGGGCGCCCGAAAACAAACCC
ATTATCCCGTGATGAACAGCTTAGAATTAATAAGCGAAATCAACTACGGCGCGATAAAGTACGTGGCTTACGACGCGTGG
AACTGAAGATTAATGCAGATGCCGTCGATGCTCTCAACAGCCTTGCAGAGCAGCGTAACATCAGCCGCAGTGAGCTGATT
GAACAGATGTTACTTGCTCAGTTAGCGCATGATCAAGAAGGGTGCTAA

Upstream 100 bases:

>100_bases
GTAATTCAATGTGTGCTATCAGCCTGAAACGTGTTAACCGAATCATCTGGAAAGGCTCCGTCACGCTTTCTGATGTAACT
CCCTTGTAGTACCGCTACCT

Downstream 100 bases:

>100_bases
CCCTGTCGGTTACCACAACAGCGTGGTGTAAGTGATTACGCCACGCTGTTATTACTTTTATGCCGTTATGACTTTTTATA
CCGTTATGACTTCCTATGAT

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MAKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVRGLRRVELKINADAVDALNSLAEQRNISRSELI
EQMLLAQLAHDQEGC

Sequences:

>Translated_95_residues
MAKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVRGLRRVELKINADAVDALNSLAEQRNISRSELI
EQMLLAQLAHDQEGC
>Mature_94_residues
AKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVRGLRRVELKINADAVDALNSLAEQRNISRSELIE
QMLLAQLAHDQEGC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=89, Percent_Identity=86.5168539325843, Blast_Score=156, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 11036; Mature: 10904

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVRGLRRVELKINAD
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHEEEECCH
AVDALNSLAEQRNISRSELIEQMLLAQLAHDQEGC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKEQTDRTTLDLFADERRPGRPKTNPLSRDEQLRINKRNQLRRDKVRGLRRVELKINAD
CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHCCHHHHEEEECCH
AVDALNSLAEQRNISRSELIEQMLLAQLAHDQEGC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]