Definition | Yersinia pestis Nepal516, complete genome. |
---|---|
Accession | NC_008149 |
Length | 4,534,590 |
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The map label for this gene is gltJ [H]
Identifier: 108811263
GI number: 108811263
Start: 1261814
End: 1262554
Strand: Reverse
Name: gltJ [H]
Synonym: YPN_1099
Alternate gene names: 108811263
Gene position: 1262554-1261814 (Counterclockwise)
Preceding gene: 108811264
Following gene: 108811262
Centisome position: 27.84
GC content: 47.37
Gene sequence:
>741_bases ATGGCAATAGACTGGAACTGGGGCATTTTTTTACAGCCAGCCCCTTTCGGCAATACCACCTATCTCGGTTGGATTTGGTC CGGCTTTCAGGTCACGGTCGCATTATCATTATGTGCTTGGGTGATCGCCTTCTTCGTCGGTTCACTATTTGGTATTTTAA GAACGGTGCCCAACCGAATCCTTTCAGGAATAGGGGCTTGTTACGTTGAATTGTTTCGTAACGTACCACTGATCGTGCAA TTTTTTACCTGGTATCTGGTGGTTCCCGAACTATTGCCAGTGAACCTTGGCACATGGTTTAAAAGTGAACTGGCACCCAA TATACAGTTCTTCCTCTCATCTATGATTTGCCTTGGATTATTCACTGCGGCGCGGGTTTGTGAACAGGTTCGCGCAGGAA TTCAATCACTGCCTCGTGGTCAAAAAGCAGCGGGCCTGGCAATGGGGCTCACCCTCACACAGACTTACCGCTATGTTTTA CTGCCCAATGCATATCGGGTGATTATTCCCCCGATGACCTCAGAAATGCTCAATCTGGTAAAAAACTCCGCAATTGCCTC AACCATCGGGCTAGTCGAAATGGCGGCACAAGCGGGTAAATTGCTGGATTATTCAGCGCATGCCTATGAATCCTTCACCG CCATCACCCTAGGTTATGTACTGATCAATGCCGTGATCATGCTGTTAATGCGCTTAGTTGAAAAGAAAGTGCAATTACCC GGCAATCTGGGGAGTAAATAA
Upstream 100 bases:
>100_bases GTCGTTCCCCACCCCGCATTTTTTTGTCAACCCTCGGGAGCCGAAGGTATTGAATCATCAGTCATCAGGGTGGCTTATCC ATCCTTTAAGGGAGTTTGTT
Downstream 100 bases:
>100_bases TGTACGAATTTGATTGGAGTTCCATCGCCCCCAGCCTGCCCTATCTGCTGCAAGGCTTGATTGTAACTGTCAAAATAACC CTCATCGCCATTGTGTTCGG
Product: glutamate/aspartate transport system permease
Products: ADP; phosphate; L-glutamate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MAIDWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRILSGIGACYVELFRNVPLIVQ FFTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGLFTAARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVL LPNAYRVIIPPMTSEMLNLVKNSAIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLP GNLGSK
Sequences:
>Translated_246_residues MAIDWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRILSGIGACYVELFRNVPLIVQ FFTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGLFTAARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVL LPNAYRVIIPPMTSEMLNLVKNSAIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLP GNLGSK >Mature_245_residues AIDWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRILSGIGACYVELFRNVPLIVQF FTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGLFTAARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVLL PNAYRVIIPPMTSEMLNLVKNSAIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLPG NLGSK
Specific function: Part of the binding-protein-dependent transport system for aspartate/glutamate; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786874, Length=246, Percent_Identity=85.3658536585366, Blast_Score=438, Evalue=1e-124, Organism=Escherichia coli, GI1788226, Length=216, Percent_Identity=30.0925925925926, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=39.2, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=26.046511627907, Blast_Score=94, Evalue=8e-21, Organism=Escherichia coli, GI1787030, Length=213, Percent_Identity=24.8826291079812, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788645, Length=221, Percent_Identity=28.0542986425339, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=25.7918552036199, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI87082239, Length=169, Percent_Identity=27.2189349112426, Blast_Score=67, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 27151; Mature: 27019
Theoretical pI: Translated: 9.36; Mature: 9.36
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIDWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRI CEEECCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGIGACYVELFRNVPLIVQFFTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH FTAARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVLLPNAYRVIIPPMTSEMLNLV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLP HHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNLGSK CCCCCC >Mature Secondary Structure AIDWNWGIFLQPAPFGNTTYLGWIWSGFQVTVALSLCAWVIAFFVGSLFGILRTVPNRI EEECCCCEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSGIGACYVELFRNVPLIVQFFTWYLVVPELLPVNLGTWFKSELAPNIQFFLSSMICLGL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHH FTAARVCEQVRAGIQSLPRGQKAAGLAMGLTLTQTYRYVLLPNAYRVIIPPMTSEMLNLV HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEECCHHHHHHHHH KNSAIASTIGLVEMAAQAGKLLDYSAHAYESFTAITLGYVLINAVIMLLMRLVEKKVQLP HHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GNLGSK CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate [Periplasm]; H2O [C]
Specific reaction: ATP + L-glutamate [Periplasm] + H2O = ADP + phosphate + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]