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The map label for this gene is ybeD [C]

Identifier: 108811249

GI number: 108811249

Start: 1247188

End: 1247451

Strand: Reverse

Name: ybeD [C]

Synonym: YPN_1085

Alternate gene names: 108811249

Gene position: 1247451-1247188 (Counterclockwise)

Preceding gene: 108811250

Following gene: 108811248

Centisome position: 27.51

GC content: 47.35

Gene sequence:

>264_bases
ATGAAAACGAAACTGAACGAACTACTTGAGTTCCCTTGCTCTTTTACCTACAAGGTCATGGGCATCGCTGAACCTCAACT
GGTTGACCAAGTAGTTGAAGTGGTACAGCGCCATGCTCCGGGTGAATATACCCCGCAGGTAAAACCGAGCAGCAAAGGCA
ACTATCACTCCGTGTCTATCACCATCACAGCCACCCATATTGATCAGGTGGAAACACTGTATGAAGAACTGGGCAATCTT
GAATTGGTCAAGATGGTGCTCTAG

Upstream 100 bases:

>100_bases
AACAGTACGTCACTCCCGCTCCGGCGGGAGTTGTGATTTTATAGCCGGATACGTTTTATCATTACCCCACTATCAGTCCG
GCGACAGCCCAGGAGCGCAC

Downstream 100 bases:

>100_bases
TTCAAGCTATATAGGCCATTTGGGTTATAGATAAACTATCAAGCCATTCACAACGCGCTAATGACGGCCCGCCCTGTTTA
TTCAGGTACCGGGCCTTATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKTKLNELLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQVKPSSKGNYHSVSITITATHIDQVETLYEELGNL
ELVKMVL

Sequences:

>Translated_87_residues
MKTKLNELLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQVKPSSKGNYHSVSITITATHIDQVETLYEELGNL
ELVKMVL
>Mature_87_residues
MKTKLNELLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQVKPSSKGNYHSVSITITATHIDQVETLYEELGNL
ELVKMVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=83.9080459770115, Blast_Score=152, Evalue=5e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1085_YERPN (Q1CKR4)

Other databases:

- EMBL:   CP000305
- EMBL:   ACNQ01000008
- RefSeq:   YP_647016.1
- ProteinModelPortal:   Q1CKR4
- SMR:   Q1CKR4
- STRING:   Q1CKR4
- GeneID:   4122700
- GenomeReviews:   CP000305_GR
- KEGG:   ypn:YPN_1085
- eggNOG:   COG2921
- HOGENOM:   HBG297220
- OMA:   TATHIEQ
- ProtClustDB:   PRK04998
- BioCyc:   YPES377628:YPN_1085-MONOMER
- HAMAP:   MF_00659
- InterPro:   IPR007454

Pfam domain/function: PF04359 DUF493

EC number: NA

Molecular weight: Translated: 9805; Mature: 9805

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKLNELLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQVKPSSKGNYHSVSI
CCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
TITATHIDQVETLYEELGNLELVKMVL
EEEECCHHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure
MKTKLNELLEFPCSFTYKVMGIAEPQLVDQVVEVVQRHAPGEYTPQVKPSSKGNYHSVSI
CCCCHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE
TITATHIDQVETLYEELGNLELVKMVL
EEEECCHHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA