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The map label for this gene is cyoD [H]

Identifier: 108811089

GI number: 108811089

Start: 1074055

End: 1074387

Strand: Reverse

Name: cyoD [H]

Synonym: YPN_0924

Alternate gene names: 108811089

Gene position: 1074387-1074055 (Counterclockwise)

Preceding gene: 108811090

Following gene: 108811088

Centisome position: 23.69

GC content: 43.84

Gene sequence:

>333_bases
ATGAGTCATTCAACAACTACTCACGGTGGAGCCAGCCACGGTAGCTTGAAGTCCTATATTATAGGCTTCGTGCTGTCGGT
GATCCTGACAGTTATTCCATTTGTTATGGTGATGAGTGGTACCGCTTCCTATACAACGACTCTGCTCACAGTGGTCGGTT
TAGCTGTTGTACAAATTGTTGTACATTTAGTGTACTTCTTACATATGAATACTTCGTCTGAAGAACGCTGGAATCTGGTG
GCGCTCCTGTTCACCGCTATGATTATTGCAATCGTTGTAGTGGGCTCACTCTGGATTATGTACAACCTCAACATCAATAT
GATGGTTGACTGA

Upstream 100 bases:

>100_bases
CCAATAGAACCCGTCTGATGTGTCTGAGTTTGTTCTGGCACTTCCTGGACGTGGTCTGGATCTGTGTATTCACCGTAGTC
TATCTGTTAGGAGCCATATA

Downstream 100 bases:

>100_bases
AGAGCTGCATGTGATGATTAAGCAATACCTGCAAGTCACTAAGCCAGGAATTATTTTCGGTAATTTAATTTCTGTCATTG
GGGGTTTTCTCCTCGCTTCC

Product: cytochrome o ubiquinol oxidase subunit IV

Products: Ubiquinone-8; H2O [C]

Alternate protein names: Ubiquinol oxidase chain D [H]

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MSHSTTTHGGASHGSLKSYIIGFVLSVILTVIPFVMVMSGTASYTTTLLTVVGLAVVQIVVHLVYFLHMNTSSEERWNLV
ALLFTAMIIAIVVVGSLWIMYNLNINMMVD

Sequences:

>Translated_110_residues
MSHSTTTHGGASHGSLKSYIIGFVLSVILTVIPFVMVMSGTASYTTTLLTVVGLAVVQIVVHLVYFLHMNTSSEERWNLV
ALLFTAMIIAIVVVGSLWIMYNLNINMMVD
>Mature_109_residues
SHSTTTHGGASHGSLKSYIIGFVLSVILTVIPFVMVMSGTASYTTTLLTVVGLAVVQIVVHLVYFLHMNTSSEERWNLVA
LLFTAMIIAIVVVGSLWIMYNLNINMMVD

Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration [H]

COG id: COG3125

COG function: function code C; Heme/copper-type cytochrome/quinol oxidase, subunit 4

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c oxidase bacterial subunit 4 family [H]

Homologues:

Organism=Escherichia coli, GI1786632, Length=108, Percent_Identity=65.7407407407407, Blast_Score=140, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005171
- InterPro:   IPR014210 [H]

Pfam domain/function: PF03626 COX4_pro [H]

EC number: NA

Molecular weight: Translated: 12005; Mature: 11873

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSTTTHGGASHGSLKSYIIGFVLSVILTVIPFVMVMSGTASYTTTLLTVVGLAVVQIV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VHLVYFLHMNTSSEERWNLVALLFTAMIIAIVVVGSLWIMYNLNINMMVD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEC
>Mature Secondary Structure 
SHSTTTHGGASHGSLKSYIIGFVLSVILTVIPFVMVMSGTASYTTTLLTVVGLAVVQIV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
VHLVYFLHMNTSSEERWNLVALLFTAMIIAIVVVGSLWIMYNLNINMMVD
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ubiquinol-8; O(2) [C]

Specific reaction: Ubiquinol-8 + O(2) = Ubiquinone-8 + H2O [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]