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The map label for this gene is asnC [C]

Identifier: 108797967

GI number: 108797967

Start: 1100290

End: 1100781

Strand: Direct

Name: asnC [C]

Synonym: Mmcs_0994

Alternate gene names: 108797967

Gene position: 1100290-1100781 (Clockwise)

Preceding gene: 108797964

Following gene: 108797968

Centisome position: 19.28

GC content: 68.09

Gene sequence:

>492_bases
TTGTGCTGGGAGCGTCTCAGCGGCGATTTGTTGTGCGGGAGGGTCATGGACCGGTTGGACGACACCGACGAGCGCATTCT
GGCCGAGCTCAACGAGCACGCCCGCGCCACGTTCGCCGAGATCGGTCAGCGGGTCAACCTGTCGGCGCCCGCGGTCAAGC
GCCGGGTGGACCGCATGCTCGACGACGGGGTGATCCGCGGCTTCACCACCGTCGTGGACCGCAACGCGCTGGGCTGGAAC
ACCGAGGCCTACGTCCTGGTGTTCTGCCACGGAACCATTGCGCCGGAACGGCTTCGGGCCGCCTGGGTGGACATCCCTGA
GGTGGTCAGCGCGGCAACGGTCACCGGCACCGCCGACGCGGTCCTGCACGTGTTGGCCCGCGACATGCGGCACCTCGAGG
AGGCGTTGGAACGCATCCGTTCCAGTGCCGACATCGAGCGCAGCGAGAGCATCGTGGTGCTGTCGAACCTCATCGAGCGC
GCGCTGCCCTGA

Upstream 100 bases:

>100_bases
GATCTGCGGCGTGCGGGTGACCGGTAGCGGCATGAATCGACGATATGTGGACGCCTACGTGCAAACAATCGCCGAACATT
GCGTCTGTTGGCGCGATCTG

Downstream 100 bases:

>100_bases
GTAACCCGAATCACAGGGTGGCGTACCCCTCCGGCGACCCATCGTGTACAACGACCACGTGAGCACTTCAGGTGGCATCG
TCATCGTCGGCGGCGGTCTC

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MCWERLSGDLLCGRVMDRLDDTDERILAELNEHARATFAEIGQRVNLSAPAVKRRVDRMLDDGVIRGFTTVVDRNALGWN
TEAYVLVFCHGTIAPERLRAAWVDIPEVVSAATVTGTADAVLHVLARDMRHLEEALERIRSSADIERSESIVVLSNLIER
ALP

Sequences:

>Translated_163_residues
MCWERLSGDLLCGRVMDRLDDTDERILAELNEHARATFAEIGQRVNLSAPAVKRRVDRMLDDGVIRGFTTVVDRNALGWN
TEAYVLVFCHGTIAPERLRAAWVDIPEVVSAATVTGTADAVLHVLARDMRHLEEALERIRSSADIERSESIVVLSNLIER
ALP
>Mature_163_residues
MCWERLSGDLLCGRVMDRLDDTDERILAELNEHARATFAEIGQRVNLSAPAVKRRVDRMLDDGVIRGFTTVVDRNALGWN
TEAYVLVFCHGTIAPERLRAAWVDIPEVVSAATVTGTADAVLHVLARDMRHLEEALERIRSSADIERSESIVVLSNLIER
ALP

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18205; Mature: 18205

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCWERLSGDLLCGRVMDRLDDTDERILAELNEHARATFAEIGQRVNLSAPAVKRRVDRML
CCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DDGVIRGFTTVVDRNALGWNTEAYVLVFCHGTIAPERLRAAWVDIPEVVSAATVTGTADA
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCHHHH
VLHVLARDMRHLEEALERIRSSADIERSESIVVLSNLIERALP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MCWERLSGDLLCGRVMDRLDDTDERILAELNEHARATFAEIGQRVNLSAPAVKRRVDRML
CCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
DDGVIRGFTTVVDRNALGWNTEAYVLVFCHGTIAPERLRAAWVDIPEVVSAATVTGTADA
HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCHHHHHHHHHCCCHHHH
VLHVLARDMRHLEEALERIRSSADIERSESIVVLSNLIERALP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA