Definition | Mycobacterium sp. MCS chromosome, complete genome. |
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Accession | NC_008146 |
Length | 5,705,448 |
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The map label for this gene is 108797956
Identifier: 108797956
GI number: 108797956
Start: 1089187
End: 1089825
Strand: Direct
Name: 108797956
Synonym: Mmcs_0983
Alternate gene names: NA
Gene position: 1089187-1089825 (Clockwise)
Preceding gene: 108797955
Following gene: 161407225
Centisome position: 19.09
GC content: 70.58
Gene sequence:
>639_bases ATGGCGGCTCAACCGGACCCGCGGACGGCGGGCGGTCGGGCGCGGTCTGCCGCCAAGACCACCCGGCTGAGCCGCGACTC GATCGTCAACGCCGCGCTGACCTTCCTGGACCGCGAGGGCTGGGATGCGCTGACCATCAACGCCCTGGCCACCCAGCTCG GCACCAAGGGTCCGTCGCTGTACAACCACGTGCACAGCCTCGACGACCTGCGGCGCACCGTGCGGATGCGGGTGGTCGGC GACATCATCGGCATGCTCACCACCGTCGGGCAGGGCCGGACCCGCGACGATGCGGTGATGGCGATGGCCAGCAGCTACCG CAGCTACGCCCACCACCACCCGGGCCGGTACTCCGCGTTCACCCGGATGCCGCTGGGCGGGGACGACCCGGAGTTCACCG ACGCCACCAGGGCGGCGGCCACCCCGGTGATCGAGGTGCTGGCCTCCTACGGCCTCGACGGCGAGGACGCGTTCTACGCC GCGCTGGAGTTCTGGTCGGCCATGCACGGGTTCGTGCTCCTGGAGATGACCGGGGTGATGAACGGCATCGACACCGATGC GGTGTTCACCGACATGGTGCTGCGGTTGGCCTCCGGTATGGAACGCCGCTCCGGCGGCGTGGGCGCTGACCTGCGCTAA
Upstream 100 bases:
>100_bases CCTCGCCCAACTCAGCCAGCAACGGGTGAACTGATCCGCCGTAGGGTTAGAGTCTGCGCCGACCGCACTCGGTCGGTGAC GGACGAAGGGTGAACAGGAC
Downstream 100 bases:
>100_bases GCGCCGGTCAGAGCGCTGCGGCTCCAGTGTGGAACGACTTTTGGAGCGACGCGGCCATCCTGGTATTGTGGGGGATCGTG CCTGGCCGTCGAGGCGCATG
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family
Number of amino acids: Translated: 212; Mature: 211
Protein sequence:
>212_residues MAAQPDPRTAGGRARSAAKTTRLSRDSIVNAALTFLDREGWDALTINALATQLGTKGPSLYNHVHSLDDLRRTVRMRVVG DIIGMLTTVGQGRTRDDAVMAMASSYRSYAHHHPGRYSAFTRMPLGGDDPEFTDATRAAATPVIEVLASYGLDGEDAFYA ALEFWSAMHGFVLLEMTGVMNGIDTDAVFTDMVLRLASGMERRSGGVGADLR
Sequences:
>Translated_212_residues MAAQPDPRTAGGRARSAAKTTRLSRDSIVNAALTFLDREGWDALTINALATQLGTKGPSLYNHVHSLDDLRRTVRMRVVG DIIGMLTTVGQGRTRDDAVMAMASSYRSYAHHHPGRYSAFTRMPLGGDDPEFTDATRAAATPVIEVLASYGLDGEDAFYA ALEFWSAMHGFVLLEMTGVMNGIDTDAVFTDMVLRLASGMERRSGGVGADLR >Mature_211_residues AAQPDPRTAGGRARSAAKTTRLSRDSIVNAALTFLDREGWDALTINALATQLGTKGPSLYNHVHSLDDLRRTVRMRVVGD IIGMLTTVGQGRTRDDAVMAMASSYRSYAHHHPGRYSAFTRMPLGGDDPEFTDATRAAATPVIEVLASYGLDGEDAFYAA LEFWSAMHGFVLLEMTGVMNGIDTDAVFTDMVLRLASGMERRSGGVGADLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22899; Mature: 22768
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.2 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAQPDPRTAGGRARSAAKTTRLSRDSIVNAALTFLDREGWDALTINALATQLGTKGPSL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH YNHVHSLDDLRRTVRMRVVGDIIGMLTTVGQGRTRDDAVMAMASSYRSYAHHHPGRYSAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE TRMPLGGDDPEFTDATRAAATPVIEVLASYGLDGEDAFYAALEFWSAMHGFVLLEMTGVM EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NGIDTDAVFTDMVLRLASGMERRSGGVGADLR CCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCC >Mature Secondary Structure AAQPDPRTAGGRARSAAKTTRLSRDSIVNAALTFLDREGWDALTINALATQLGTKGPSL CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHH YNHVHSLDDLRRTVRMRVVGDIIGMLTTVGQGRTRDDAVMAMASSYRSYAHHHPGRYSAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE TRMPLGGDDPEFTDATRAAATPVIEVLASYGLDGEDAFYAALEFWSAMHGFVLLEMTGVM EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NGIDTDAVFTDMVLRLASGMERRSGGVGADLR CCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA