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The map label for this gene is 108797717

Identifier: 108797717

GI number: 108797717

Start: 783382

End: 784632

Strand: Reverse

Name: 108797717

Synonym: Mmcs_0738

Alternate gene names: NA

Gene position: 784632-783382 (Counterclockwise)

Preceding gene: 108797718

Following gene: 108797716

Centisome position: 13.75

GC content: 71.3

Gene sequence:

>1251_bases
GTGGTTTCTGACATCCAGCAGACCGTCGACGCGGTGTGGCGGATGGAGGCCGCCAAGATCGTCGCCACGCTCACCCGCAC
CGTCGGCGACGTCGGCTTGGCCGAGGATCTCGCCGCCGACGCCCTCGTCGACGCCCTCACCCAGTGGCCGTCGACCGGCG
TGCCGAACAACCCGGGCGCCTGGCTGACCACCGTCGCCAAACGCAAGGCGATCGACCACTGGCGGCGGCGCGACAACCTC
GACGCGAAGTACACCGAACTGGCCCGCGACCTCGAAACCCACCTCGACGAACCCGCCTGGGACCCCGACCACATCGACGA
CGACGTCCTGCGGCTCATCTTCATCGCGGCCCACCCGGTGCTGTCGCGGGAGAACCAGATCGCGCTGACCCTTCGCGTCA
TCGGCGGCCTGACCACCGAGGAGATCGCCAGGGCCTTCCTGACGCCGAAAGCCACGGTGGCCCAACGCATCGTGCGGGCC
AAGAAGACACTGGCCGACGCGGAGGTCCCGTTCGAGGTGCCGCCCCGCGAGCAGTACCCGCAACGCCTGTCGGCGGTGTT
GAGCGTCATCTACCTCATCTACAACGAGGGGTATTCGGCGTCCTCCGGGCAGCGTTGGATCCGCGACGAACTGTGCCGCG
AGGCGCTGCGCCTGGGCCGCGTCCTCGCCGCGCTGGTGCCCGACGAACCCGAGGCCCACGGGCTGGTGGCGCTGATGGAA
CTGCAGAGCTCGCGGTTCGCGGCCCGTACCGACGACGCGGGCCGCCCGATCCTGCTCGAGGACCAGGACCGGACGAAATG
GGACCGCGCCCAGATCGGCCGGGGCGTCGCGGCGCTGCGGCGTGCGGTGGCGGCCATCGACCGGCGAGGCACCGGGTGGG
GCCCGTACGCGCTGCAGGCCGCGCTCGCCGAATGCCACGCCACCGCACCGTCGACCGCCGAGACCGACTGGCGGCGCATC
GTGACCATCTACGACGCGCTGCTGCAGATCACGCCCTCGGCCGTCGTCGAACTCAACCGCGCCGTGGCCGTCGCGATGGC
CGACGGGGCCGCCGCCGCGCTCGAGATCGTCGACGGGATCACCGGGCTCGCCGACTCCTATCTATTGCCCAGCGTGCGCG
GCGAACTGCTGGCCCGCCTGGGCCGCGCCGACGAGGCCGCCGCTCAGTTCGACCGGGCCGCCGCACTCGCCGACAACGAG
CGCGAACGAGACGTGTTGTCCGACAAAGCCGCCCGGGTACGCCAGAGGTGA

Upstream 100 bases:

>100_bases
AGGGCGAGCCGTCGGCTGATTCTCATCCGCGAGCAGACGCAAATGCTCCGCCTCGACGGCGTGTCGCGGGACATTTGCGT
CTGCTCGGCAGAATGGGCCC

Downstream 100 bases:

>100_bases
CGTGGCACGATGGCTGAGATGACTGTGCGCGCGGCGTTGTTCGACTTCTCCGGAACACTCTTCCGTCTCGAGGAGGACGA
GAGCTGGTTCACCGGTATCG

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MVSDIQQTVDAVWRMEAAKIVATLTRTVGDVGLAEDLAADALVDALTQWPSTGVPNNPGAWLTTVAKRKAIDHWRRRDNL
DAKYTELARDLETHLDEPAWDPDHIDDDVLRLIFIAAHPVLSRENQIALTLRVIGGLTTEEIARAFLTPKATVAQRIVRA
KKTLADAEVPFEVPPREQYPQRLSAVLSVIYLIYNEGYSASSGQRWIRDELCREALRLGRVLAALVPDEPEAHGLVALME
LQSSRFAARTDDAGRPILLEDQDRTKWDRAQIGRGVAALRRAVAAIDRRGTGWGPYALQAALAECHATAPSTAETDWRRI
VTIYDALLQITPSAVVELNRAVAVAMADGAAAALEIVDGITGLADSYLLPSVRGELLARLGRADEAAAQFDRAAALADNE
RERDVLSDKAARVRQR

Sequences:

>Translated_416_residues
MVSDIQQTVDAVWRMEAAKIVATLTRTVGDVGLAEDLAADALVDALTQWPSTGVPNNPGAWLTTVAKRKAIDHWRRRDNL
DAKYTELARDLETHLDEPAWDPDHIDDDVLRLIFIAAHPVLSRENQIALTLRVIGGLTTEEIARAFLTPKATVAQRIVRA
KKTLADAEVPFEVPPREQYPQRLSAVLSVIYLIYNEGYSASSGQRWIRDELCREALRLGRVLAALVPDEPEAHGLVALME
LQSSRFAARTDDAGRPILLEDQDRTKWDRAQIGRGVAALRRAVAAIDRRGTGWGPYALQAALAECHATAPSTAETDWRRI
VTIYDALLQITPSAVVELNRAVAVAMADGAAAALEIVDGITGLADSYLLPSVRGELLARLGRADEAAAQFDRAAALADNE
RERDVLSDKAARVRQR
>Mature_416_residues
MVSDIQQTVDAVWRMEAAKIVATLTRTVGDVGLAEDLAADALVDALTQWPSTGVPNNPGAWLTTVAKRKAIDHWRRRDNL
DAKYTELARDLETHLDEPAWDPDHIDDDVLRLIFIAAHPVLSRENQIALTLRVIGGLTTEEIARAFLTPKATVAQRIVRA
KKTLADAEVPFEVPPREQYPQRLSAVLSVIYLIYNEGYSASSGQRWIRDELCREALRLGRVLAALVPDEPEAHGLVALME
LQSSRFAARTDDAGRPILLEDQDRTKWDRAQIGRGVAALRRAVAAIDRRGTGWGPYALQAALAECHATAPSTAETDWRRI
VTIYDALLQITPSAVVELNRAVAVAMADGAAAALEIVDGITGLADSYLLPSVRGELLARLGRADEAAAQFDRAAALADNE
RERDVLSDKAARVRQR

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 45618; Mature: 45618

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSDIQQTVDAVWRMEAAKIVATLTRTVGDVGLAEDLAADALVDALTQWPSTGVPNNPGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
WLTTVAKRKAIDHWRRRDNLDAKYTELARDLETHLDEPAWDPDHIDDDVLRLIFIAAHPV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
LSRENQIALTLRVIGGLTTEEIARAFLTPKATVAQRIVRAKKTLADAEVPFEVPPREQYP
HCCCCCEEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
QRLSAVLSVIYLIYNEGYSASSGQRWIRDELCREALRLGRVLAALVPDEPEAHGLVALME
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LQSSRFAARTDDAGRPILLEDQDRTKWDRAQIGRGVAALRRAVAAIDRRGTGWGPYALQA
HHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ALAECHATAPSTAETDWRRIVTIYDALLQITPSAVVELNRAVAVAMADGAAAALEIVDGI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
TGLADSYLLPSVRGELLARLGRADEAAAQFDRAAALADNERERDVLSDKAARVRQR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVSDIQQTVDAVWRMEAAKIVATLTRTVGDVGLAEDLAADALVDALTQWPSTGVPNNPGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCH
WLTTVAKRKAIDHWRRRDNLDAKYTELARDLETHLDEPAWDPDHIDDDVLRLIFIAAHPV
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
LSRENQIALTLRVIGGLTTEEIARAFLTPKATVAQRIVRAKKTLADAEVPFEVPPREQYP
HCCCCCEEEEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
QRLSAVLSVIYLIYNEGYSASSGQRWIRDELCREALRLGRVLAALVPDEPEAHGLVALME
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LQSSRFAARTDDAGRPILLEDQDRTKWDRAQIGRGVAALRRAVAAIDRRGTGWGPYALQA
HHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ALAECHATAPSTAETDWRRIVTIYDALLQITPSAVVELNRAVAVAMADGAAAALEIVDGI
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCHHHHHHHHHHH
TGLADSYLLPSVRGELLARLGRADEAAAQFDRAAALADNERERDVLSDKAARVRQR
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]