Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
---|---|
Accession | NC_008095 |
Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is yleA [C]
Identifier: 108763990
GI number: 108763990
Start: 5754140
End: 5755819
Strand: Direct
Name: yleA [C]
Synonym: MXAN_4597
Alternate gene names: 108763990
Gene position: 5754140-5755819 (Clockwise)
Preceding gene: 108757828
Following gene: 108760891
Centisome position: 62.96
GC content: 63.45
Gene sequence:
>1680_bases ATGGCGGAGTCGACACGTCGCGATTGCATCGTCATCGGGTACAACGAGACCCCGTTCGACGAGTACGAAGCCGGAATCAG GCGCTTTGGCGAGGACTCCGAAGCGTATCGGGATCTGAAGTTCAGCTTCATCGAGCTCGAAGGCAAGCGGCTCAACTACG TGGACTTGCTGAACCACGTGTACTGCAGAGCCCTCCCCTCGGGGACGCCACACGCGGCGTTCCGCTCTGGAGGCATCCCT AGCCTCGCTGCCGTCTATCTCTGCAGCTTCCTGGGCCGCCGTGGCCACGACGTGACGTACCTCAACCTGTTCCAGCACGA GAAGGAGCGCCTGGCCGAGCTGCTCGCTCAAAACCCTCGCACGGTGGCCATCACCACCACCTTCTACGTCCTCAATGATC CCGTCATCGAGATGGTGCAGTTCATCCGCCAGCACAACCCCGACGTCCGGATCATCGTCGGCGGTCCGCTGGTTTCCAAC CATCACCGGCGCTACGAGGGGAATGAGCTCGCGGTGGTGCTCGACGACCTCGGCGCGGACATCTACGTCGTCGAGAGCCA GGGCGAACTCACGCTCTCGCGGGTACTCGACCGGCTGAAGGCGGGCCAGGAGCTGAGCGACGTCCCCAACCTCATCTACC CCGCCGAGGGAGGGCCCGTCCGCGCCGGGCGCTACCGCATCAACCCACCGCAGGCGGAAAGCAACTCCCTCGATGAGAAC ATCATCGACTGGCGCGGCATGGCGGAGAGCCCCCTGGGCCCCACGCTCCAGACCCGCACCGCCCGGAGCTGTGCATACAG TTGCTCGTTCTGTGCCTATCCCATGCGTGCTGGCAGCCTGACCTTGGCGGGCATGGATGCGGTGGCACGCGAACTGGACG CGATGGCCGAGCTGGGCACCCAGAACGTCGTCTTCATTGACGATACGTTCAACGTGCCGCTGAAGCGCTTCAAGGAACTG TGCCGGTTGCTGATCGAGCGCCGCTACGGCTTCAACTGGTTCTCCTATTTCCGGTGCAGCAACTCGGACGACGAGGCCGT GGACCTGGCGGCGCAGAGCGGGTGCCGCGGCGTCTTCCTTGGGATTGAATCCGGCTCGCCGCGAATCCTTGCCAACATGA ACAAGGCCGCGACGGTCGAGAAATACGTGAGCGGCATGAAGCGGCTGCATGCCCACGGCATCCTCACCTTCGCGTCATTC ATCCTGGGCTTCCCCGGCGAGACGGAAGAGACGGTCGAGGAGACCCTCGCGTTCATCCAGGAGACGCGGCCGGACTACTA CCGCACACAGCTTTGGTACTGCGAACCCGGTACTGCCGTGGATGCAAAGCGGCAGCAGTATGGGATTACCGGCCAGGGGT TCATCTGGCGGCACGACACCATGGAGAGCCTGGAGGCGATGGATCACATCGACCGGATGTTCCTCACGGTGAAGGACTCC GTTTGGTTGCCGCAGTGGTCATTCGACTTCTGGATCATCCCCTACCTGCTCGGGAGGGGGCTCCAGACGGAGCAGTTCAA GGCGCTGATGCGGCTTGCCCACCAGCTCCTTGCGCTGGAGATCGCCTCCGTCTCTTCGGAGACGAAGCGCGCCCAGCAGC GGAACTACGTGGGGCAGATGGAAGCGCTGGTGCGTCAATGGAACGGCGCATCCTCCCAAGCGGTGCTGGCCGGAAGATGA
Upstream 100 bases:
>100_bases AGCGGTAGAGGGGAGCGCTCCCGGCCCACCCCGGAAGCAGCCCCAGCTCACCGTGGCGAGGCGGATCCGGCGGCAGCGGC CGAAGCACAGGGGAGCGGTC
Downstream 100 bases:
>100_bases TGGGAGTTCGCAATTGAGCATCGAAGCGTATCGGCTCTCTCCTCAGCAGCTCCGTCTGTGGCGGTTGCACGGCAAGCACC AGACGCTCCGGGTCCAGGCA
Product: putative methyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 559; Mature: 558
Protein sequence:
>559_residues MAESTRRDCIVIGYNETPFDEYEAGIRRFGEDSEAYRDLKFSFIELEGKRLNYVDLLNHVYCRALPSGTPHAAFRSGGIP SLAAVYLCSFLGRRGHDVTYLNLFQHEKERLAELLAQNPRTVAITTTFYVLNDPVIEMVQFIRQHNPDVRIIVGGPLVSN HHRRYEGNELAVVLDDLGADIYVVESQGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDEN IIDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGTQNVVFIDDTFNVPLKRFKEL CRLLIERRYGFNWFSYFRCSNSDDEAVDLAAQSGCRGVFLGIESGSPRILANMNKAATVEKYVSGMKRLHAHGILTFASF ILGFPGETEETVEETLAFIQETRPDYYRTQLWYCEPGTAVDAKRQQYGITGQGFIWRHDTMESLEAMDHIDRMFLTVKDS VWLPQWSFDFWIIPYLLGRGLQTEQFKALMRLAHQLLALEIASVSSETKRAQQRNYVGQMEALVRQWNGASSQAVLAGR
Sequences:
>Translated_559_residues MAESTRRDCIVIGYNETPFDEYEAGIRRFGEDSEAYRDLKFSFIELEGKRLNYVDLLNHVYCRALPSGTPHAAFRSGGIP SLAAVYLCSFLGRRGHDVTYLNLFQHEKERLAELLAQNPRTVAITTTFYVLNDPVIEMVQFIRQHNPDVRIIVGGPLVSN HHRRYEGNELAVVLDDLGADIYVVESQGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDEN IIDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGTQNVVFIDDTFNVPLKRFKEL CRLLIERRYGFNWFSYFRCSNSDDEAVDLAAQSGCRGVFLGIESGSPRILANMNKAATVEKYVSGMKRLHAHGILTFASF ILGFPGETEETVEETLAFIQETRPDYYRTQLWYCEPGTAVDAKRQQYGITGQGFIWRHDTMESLEAMDHIDRMFLTVKDS VWLPQWSFDFWIIPYLLGRGLQTEQFKALMRLAHQLLALEIASVSSETKRAQQRNYVGQMEALVRQWNGASSQAVLAGR >Mature_558_residues AESTRRDCIVIGYNETPFDEYEAGIRRFGEDSEAYRDLKFSFIELEGKRLNYVDLLNHVYCRALPSGTPHAAFRSGGIPS LAAVYLCSFLGRRGHDVTYLNLFQHEKERLAELLAQNPRTVAITTTFYVLNDPVIEMVQFIRQHNPDVRIIVGGPLVSNH HRRYEGNELAVVLDDLGADIYVVESQGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDENI IDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGTQNVVFIDDTFNVPLKRFKELC RLLIERRYGFNWFSYFRCSNSDDEAVDLAAQSGCRGVFLGIESGSPRILANMNKAATVEKYVSGMKRLHAHGILTFASFI LGFPGETEETVEETLAFIQETRPDYYRTQLWYCEPGTAVDAKRQQYGITGQGFIWRHDTMESLEAMDHIDRMFLTVKDSV WLPQWSFDFWIIPYLLGRGLQTEQFKALMRLAHQLLALEIASVSSETKRAQQRNYVGQMEALVRQWNGASSQAVLAGR
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 63132; Mature: 63001
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAESTRRDCIVIGYNETPFDEYEAGIRRFGEDSEAYRDLKFSFIELEGKRLNYVDLLNHV CCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCHHHHHHHH YCRALPSGTPHAAFRSGGIPSLAAVYLCSFLGRRGHDVTYLNLFQHEKERLAELLAQNPR HHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC TVAITTTFYVLNDPVIEMVQFIRQHNPDVRIIVGGPLVSNHHRRYEGNELAVVLDDLGAD EEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCEEEEEEECCCCC IYVVESQGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDEN EEEEECCCCCHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCEECCCCCCCCCCCCHH IIDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGT HHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCC QNVVFIDDTFNVPLKRFKELCRLLIERRYGFNWFSYFRCSNSDDEAVDLAAQSGCRGVFL CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHCCCCEEEE GIESGSPRILANMNKAATVEKYVSGMKRLHAHGILTFASFILGFPGETEETVEETLAFIQ EECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ETRPDYYRTQLWYCEPGTAVDAKRQQYGITGQGFIWRHDTMESLEAMDHIDRMFLTVKDS HCCCCHHEEEEEEECCCCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHEEEECC VWLPQWSFDFWIIPYLLGRGLQTEQFKALMRLAHQLLALEIASVSSETKRAQQRNYVGQM EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALVRQWNGASSQAVLAGR HHHHHHCCCCCCCEEECCC >Mature Secondary Structure AESTRRDCIVIGYNETPFDEYEAGIRRFGEDSEAYRDLKFSFIELEGKRLNYVDLLNHV CCCCCCCEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCHHHHHHHH YCRALPSGTPHAAFRSGGIPSLAAVYLCSFLGRRGHDVTYLNLFQHEKERLAELLAQNPR HHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCC TVAITTTFYVLNDPVIEMVQFIRQHNPDVRIIVGGPLVSNHHRRYEGNELAVVLDDLGAD EEEEEEEEEEECCHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCEEEEEEECCCCC IYVVESQGELTLSRVLDRLKAGQELSDVPNLIYPAEGGPVRAGRYRINPPQAESNSLDEN EEEEECCCCCHHHHHHHHHHCCCCHHHCCCEEECCCCCCCCCCCEECCCCCCCCCCCCHH IIDWRGMAESPLGPTLQTRTARSCAYSCSFCAYPMRAGSLTLAGMDAVARELDAMAELGT HHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHCCC QNVVFIDDTFNVPLKRFKELCRLLIERRYGFNWFSYFRCSNSDDEAVDLAAQSGCRGVFL CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHCCCCEEEE GIESGSPRILANMNKAATVEKYVSGMKRLHAHGILTFASFILGFPGETEETVEETLAFIQ EECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH ETRPDYYRTQLWYCEPGTAVDAKRQQYGITGQGFIWRHDTMESLEAMDHIDRMFLTVKDS HCCCCHHEEEEEEECCCCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHEEEECC VWLPQWSFDFWIIPYLLGRGLQTEQFKALMRLAHQLLALEIASVSSETKRAQQRNYVGQM EECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EALVRQWNGASSQAVLAGR HHHHHHCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9679194 [H]