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The map label for this gene is ihfB [H]

Identifier: 108760828

GI number: 108760828

Start: 4081874

End: 4082257

Strand: Direct

Name: ihfB [H]

Synonym: MXAN_3501

Alternate gene names: 108760828

Gene position: 4081874-4082257 (Clockwise)

Preceding gene: 108761721

Following gene: 108763248

Centisome position: 44.66

GC content: 71.09

Gene sequence:

>384_bases
ATGACGCGCAGTGAGCTCATCGAGCGCATCGTGGAGCGTGCCACGCATGTTCCACGGCGTGAGGTGGAAGCCATCGTCCA
CGCCGTCTTCGAGGAAATGTCCCAGGCCCTGATCGCCGGACGGCGAATCGAGCTGCGGGGCTTCGGCGTCTTCTGCGTCC
GCACGCGCCGGGCTCGCACGGGCCGTAACCCCAAGACGGGCCAGCGCGTGTCGGTGCCCGCGCGGCGCACGTTGTCCTTC
GCCGCCGGAAAGGACCTGCGCGAGCGGCTCAATGCCCCACCCGCCATGGCGGCTTCCCCCGTTCCGGACACCCCACCCGG
GGAGGCGCTGTCGCCGCTGCCGCTCGCCGCGGGGGCTTCGTTCTCCGTGCCCGTCACGGGTTGA

Upstream 100 bases:

>100_bases
GGCCCGCGGACGTCCGGTTGCGGTGAGGGGACGGGGAGGGTGGTTTGTCCTTTGGGGGCCCGCTTCGGTAGAGTCCTCGG
TCGCCCAGCGGGAGGTGTGC

Downstream 100 bases:

>100_bases
CGGTGAGGCTTGGAGTCGTTCCGCGAATTTGACCGGCTCAGGGGTGGGGCGTACTTTGCCCTCCATGCCGTCGCTACAGG
CCGCAACACGGATTTCGTGT

Product: integration host factor subunit beta

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRARTGRNPKTGQRVSVPARRTLSF
AAGKDLRERLNAPPAMAASPVPDTPPGEALSPLPLAAGASFSVPVTG

Sequences:

>Translated_127_residues
MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRARTGRNPKTGQRVSVPARRTLSF
AAGKDLRERLNAPPAMAASPVPDTPPGEALSPLPLAAGASFSVPVTG
>Mature_126_residues
TRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRARTGRNPKTGQRVSVPARRTLSFA
AGKDLRERLNAPPAMAASPVPDTPPGEALSPLPLAAGASFSVPVTG

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=47.2527472527472, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1788005, Length=95, Percent_Identity=36.8421052631579, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1786644, Length=94, Percent_Identity=38.2978723404255, Blast_Score=69, Evalue=9e-14,
Organism=Escherichia coli, GI1790433, Length=88, Percent_Identity=32.9545454545455, Blast_Score=62, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 13765; Mature: 13634

Theoretical pI: Translated: 11.97; Mature: 11.97

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECHHHHC
GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAPPAMAASPVPDTPPGEALSPLPLAAGAS
CCCCCCCCEEECCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FSVPVTG
CCCCCCC
>Mature Secondary Structure 
TRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECHHHHC
GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAPPAMAASPVPDTPPGEALSPLPLAAGAS
CCCCCCCCEEECCHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FSVPVTG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA