Click here to switch to the map view.

The map label for this gene is nodC [H]

Identifier: 108760299

GI number: 108760299

Start: 4064921

End: 4066174

Strand: Reverse

Name: nodC [H]

Synonym: MXAN_3484

Alternate gene names: 108760299

Gene position: 4066174-4064921 (Counterclockwise)

Preceding gene: 108758138

Following gene: 108759089

Centisome position: 44.49

GC content: 64.67

Gene sequence:

>1254_bases
ATGGAGCTCTTTCCAATTCAGTTACTTTTCATGGTGGTTCTGATGAACCGCTATGTCCTCGGGCCATTGCTACGGCGCCT
GAAGGGGCGGAAGTTCGACAGAGTCGACGACACCTACCTGCCGCGAGTCGCCATCGTCATCCCGCTGTTCAACGAAGGCG
AAGGCATCTACCACGGCGTTCGCAGTCTCCTGGAGCAGGACTATCCCAGCCACCTGCTGCAAATCGTGGTGGTGGATGAC
TGCTCCAAGGATGACAGCTACGCCTGGGCGCTGAAGGCGGCGGAGGGAAATCCCAACGTCATCGTCATGCGCAACCCGGA
GAACATGGGCAAGCGCAAGGGCATCAACCGCGCGGTGAAGGCCGCCACGGACGCGGAAATCATCGTGTCGGTGGACTCGG
ACGTCATCGTCGACAAGGCCGCCGTCCGCCAACTGGTGCGCCGCTTCGTCAGCCCGCGCATCGCCGCGGTGGGCGGCCGA
ACCTACGTGACGAACCGTCATCAGAACTGGATGACGCGGATGATTGAAATCAAGTTCCACTTCGCCCAGGAGTGGCTCAA
GGACCTGGAGCGCAGCTTCCGCCAGGTGATGTGCCTGTCGGGCTGCCTCACCGCGTACCGCCGCCACGTGCTGCTGGAGC
TGGAGCCCATCCTCGAGGCGCGCGCCATCGCGGGCATCCCCATCAAGTACGGCGAGGACCGGTTCCTCACGCGGCAGATC
GTCAAGCACGACTACGAGACGGTCTACACGCTGGACGCCTTTTGCTTCACCGCCGCGCCGTCGACGCTGGCCGGGTACTT
CTCCCAGCAGCTCCGGTGGCGCCGCTCCAACCTGGTGGACCTGCTGGGCGGCCTGTCACACGCCTGGCGGCTCCACCCGG
TCGTGGCGGTCCACTACGTGTCGCAGCTCGCGCTGCTCCTCTCCTACCCGCTGGTCATCGTGCACAACGTCCTGACCGGC
GAGTTCTGGGACATCCTCGCCTTCCACTTCCTGGTCATCGGATTGCTGGGGGTCATCTATCGCATCGAAACACGGCACCT
TCCCGCGGACCGACGCGTCCACGGCGCCAGCTTCCTGCCCATGGCCCTGCTGATGCCGGTGACGTACGCGCTCTTCACAC
CGCTGGCGCTGCTGACGCTGGACTCGGGGAGCTGGGAGACACGGGGCAGCGCCAACACCGCTCCCGAGACGTCCCCGGTC
GACTCCGGGGGCCGCTTTCCTCCCACCCATGCTGGTGAGGGCACTACGCCATGA

Upstream 100 bases:

>100_bases
CGTCGTCCCCGCCAACCTTTCGCTCGCCCATCTTGAGGGTCGTGACGGTTGCAGGGGCAGCGACAAGGGCTGCTCGTGGC
GTGATGGGGGGCGGGGACGG

Downstream 100 bases:

>100_bases
ACCAACGCGTCGCCAATCGCGTCAACAGCATCGCCGTATCGGCCTACAAGTTCATCGGTTCCCTGCTGCTCGCGCTCATC
ATGCTCGGGCTGGTGTCCTT

Product: group 2 glycosyl transferase

Products: NA

Alternate protein names: Nodulation protein C [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MELFPIQLLFMVVLMNRYVLGPLLRRLKGRKFDRVDDTYLPRVAIVIPLFNEGEGIYHGVRSLLEQDYPSHLLQIVVVDD
CSKDDSYAWALKAAEGNPNVIVMRNPENMGKRKGINRAVKAATDAEIIVSVDSDVIVDKAAVRQLVRRFVSPRIAAVGGR
TYVTNRHQNWMTRMIEIKFHFAQEWLKDLERSFRQVMCLSGCLTAYRRHVLLELEPILEARAIAGIPIKYGEDRFLTRQI
VKHDYETVYTLDAFCFTAAPSTLAGYFSQQLRWRRSNLVDLLGGLSHAWRLHPVVAVHYVSQLALLLSYPLVIVHNVLTG
EFWDILAFHFLVIGLLGVIYRIETRHLPADRRVHGASFLPMALLMPVTYALFTPLALLTLDSGSWETRGSANTAPETSPV
DSGGRFPPTHAGEGTTP

Sequences:

>Translated_417_residues
MELFPIQLLFMVVLMNRYVLGPLLRRLKGRKFDRVDDTYLPRVAIVIPLFNEGEGIYHGVRSLLEQDYPSHLLQIVVVDD
CSKDDSYAWALKAAEGNPNVIVMRNPENMGKRKGINRAVKAATDAEIIVSVDSDVIVDKAAVRQLVRRFVSPRIAAVGGR
TYVTNRHQNWMTRMIEIKFHFAQEWLKDLERSFRQVMCLSGCLTAYRRHVLLELEPILEARAIAGIPIKYGEDRFLTRQI
VKHDYETVYTLDAFCFTAAPSTLAGYFSQQLRWRRSNLVDLLGGLSHAWRLHPVVAVHYVSQLALLLSYPLVIVHNVLTG
EFWDILAFHFLVIGLLGVIYRIETRHLPADRRVHGASFLPMALLMPVTYALFTPLALLTLDSGSWETRGSANTAPETSPV
DSGGRFPPTHAGEGTTP
>Mature_417_residues
MELFPIQLLFMVVLMNRYVLGPLLRRLKGRKFDRVDDTYLPRVAIVIPLFNEGEGIYHGVRSLLEQDYPSHLLQIVVVDD
CSKDDSYAWALKAAEGNPNVIVMRNPENMGKRKGINRAVKAATDAEIIVSVDSDVIVDKAAVRQLVRRFVSPRIAAVGGR
TYVTNRHQNWMTRMIEIKFHFAQEWLKDLERSFRQVMCLSGCLTAYRRHVLLELEPILEARAIAGIPIKYGEDRFLTRQI
VKHDYETVYTLDAFCFTAAPSTLAGYFSQQLRWRRSNLVDLLGGLSHAWRLHPVVAVHYVSQLALLLSYPLVIVHNVLTG
EFWDILAFHFLVIGLLGVIYRIETRHLPADRRVHGASFLPMALLMPVTYALFTPLALLTLDSGSWETRGSANTAPETSPV
DSGGRFPPTHAGEGTTP

Specific function: Involved in the synthesis of Nod factor, a sulfated N- acyl-beta-1,4-tetrasaccharide of N-acetylglucosamine which initiates a series of events in the host plant species leading eventually to nodulation [H]

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nodC/HAS family [H]

Homologues:

Organism=Homo sapiens, GI20302153, Length=294, Percent_Identity=25.1700680272109, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI167466171, Length=293, Percent_Identity=28.3276450511945, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI4885391, Length=307, Percent_Identity=23.7785016286645, Blast_Score=90, Evalue=4e-18,
Organism=Escherichia coli, GI1787259, Length=333, Percent_Identity=24.3243243243243, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 47132; Mature: 47132

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFPIQLLFMVVLMNRYVLGPLLRRLKGRKFDRVDDTYLPRVAIVIPLFNEGEGIYHGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHH
RSLLEQDYPSHLLQIVVVDDCSKDDSYAWALKAAEGNPNVIVMRNPENMGKRKGINRAVK
HHHHHCCCHHHHEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHCHHHHHH
AATDAEIIVSVDSDVIVDKAAVRQLVRRFVSPRIAAVGGRTYVTNRHQNWMTRMIEIKFH
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHHHHHHHHH
FAQEWLKDLERSFRQVMCLSGCLTAYRRHVLLELEPILEARAIAGIPIKYGEDRFLTRQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
VKHDYETVYTLDAFCFTAAPSTLAGYFSQQLRWRRSNLVDLLGGLSHAWRLHPVVAVHYV
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQLALLLSYPLVIVHNVLTGEFWDILAFHFLVIGLLGVIYRIETRHLPADRRVHGASFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
MALLMPVTYALFTPLALLTLDSGSWETRGSANTAPETSPVDSGGRFPPTHAGEGTTP
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELFPIQLLFMVVLMNRYVLGPLLRRLKGRKFDRVDDTYLPRVAIVIPLFNEGEGIYHGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHH
RSLLEQDYPSHLLQIVVVDDCSKDDSYAWALKAAEGNPNVIVMRNPENMGKRKGINRAVK
HHHHHCCCHHHHEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECCHHHHHHHCHHHHHH
AATDAEIIVSVDSDVIVDKAAVRQLVRRFVSPRIAAVGGRTYVTNRHQNWMTRMIEIKFH
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHHHHHHHHH
FAQEWLKDLERSFRQVMCLSGCLTAYRRHVLLELEPILEARAIAGIPIKYGEDRFLTRQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
VKHDYETVYTLDAFCFTAAPSTLAGYFSQQLRWRRSNLVDLLGGLSHAWRLHPVVAVHYV
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQLALLLSYPLVIVHNVLTGEFWDILAFHFLVIGLLGVIYRIETRHLPADRRVHGASFLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
MALLMPVTYALFTPLALLTLDSGSWETRGSANTAPETSPVDSGGRFPPTHAGEGTTP
HHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2985535; 6336331; 11481432 [H]