Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
---|---|
Accession | NC_008095 |
Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is gluQ [H]
Identifier: 108759102
GI number: 108759102
Start: 1485267
End: 1486214
Strand: Reverse
Name: gluQ [H]
Synonym: MXAN_1271
Alternate gene names: 108759102
Gene position: 1486214-1485267 (Counterclockwise)
Preceding gene: 108759743
Following gene: 108760093
Centisome position: 16.26
GC content: 71.73
Gene sequence:
>948_bases ATGAGCCAGGTCCGAGGCCGCTTCGCCCCCAGCCCCACCGGGCGCATGCACCTGGGAAACATCCGCAGCGCGCTGCTCGG CTGGCTCCAGGCGAGGGCGGCCCACGGCCGCTTCCTGCTGCGCATCGAGGACCTGGACCGCGCGCGCTGCAAGCCGCAGT ACGTGGACGACCTGCTGCGCGACATGGAATGGCTGGGGCTGGACTGGGACGAGCAGCCCGTCTTCCAGAGCCAGCGGGAC GGCCTCTACCGCGACGCCCAGGCCCGGTTGGAACAAGCAGGGCGCGTGTATCCCTGCTTCTGCACACGCGCGGAGATTGC ACGGGCCGCCAGCGCGCCTCACGGACTCTCCGACGAAGGCCCCCGCTACCCGGGCACCTGCGCGCACCTCACCCGCGAAC AGATTTCCGAGCGCGCCCGCACGCGCCCCCCCGCGTACCGCTTCCGCGCGGTCCCCGGCGAGGTCCGCTTCGTGGACGGC TTGCAGGGCTCGTACTCGCAAGACGTGGACGCGGTGGTGGGCGACTTCGTCGTGCGGCGCAACGACGGCGTGGCCAGCTA CCAGCTCGCGGTGGTGGTGGACGATGCGGCCACGGACATCACCCACGTGCTGCGCGGGGATGACCTGCTCTCCTCCACGC CCCGGCAGCTCCAGCTCTACGCCGCGCTCAGCCTGCGCGCGCCCGACTTCCTCCACGTCCCGCTGGTGCTGGGCGAAGAC GGCAAGCGTCTCGCCAAGCGCGAGGGTGCCTTCGCGCTCGCGGAGTTGCGTGAGCGTGGCGTGGCTCCCGAGCGGGTGCT GGGCCTGCTCGCCTCATGGAGTGGATGGGGAGACGGTGGCCCCCTGACGCTCGCCGAACTGGTGCACAGCTTCCGTCCCG AAAGACTGCCGCGCACGCCCATCGTCGCGGGAGAGGCCGCGCTCCGAGAAGCACTCGGCCTGGGGTGA
Upstream 100 bases:
>100_bases GCACTGCGGCGGGCCCCCCGCGTCGGTTATGGTCCCCCGCGACGATGATTCACTCCGCGTGCCCGCACGCCCTCCTTCCC CACGGACCTCGGGGGCGCCC
Downstream 100 bases:
>100_bases GCCCGGGCTCCGCCCTCCTCCACGGCGAGACATCCGGGCGCGGCGGAATCGTGCCTCCGCTGCCCCATGGCCATGTTTGC CGCGAACACGAGCGCCTCCT
Product: tRNA synthetase class I domain-containing protein
Products: AMP; diphosphate; L-glutamyl-tRNA(Glu)
Alternate protein names: Glu-Q-RSs [H]
Number of amino acids: Translated: 315; Mature: 314
Protein sequence:
>315_residues MSQVRGRFAPSPTGRMHLGNIRSALLGWLQARAAHGRFLLRIEDLDRARCKPQYVDDLLRDMEWLGLDWDEQPVFQSQRD GLYRDAQARLEQAGRVYPCFCTRAEIARAASAPHGLSDEGPRYPGTCAHLTREQISERARTRPPAYRFRAVPGEVRFVDG LQGSYSQDVDAVVGDFVVRRNDGVASYQLAVVVDDAATDITHVLRGDDLLSSTPRQLQLYAALSLRAPDFLHVPLVLGED GKRLAKREGAFALAELRERGVAPERVLGLLASWSGWGDGGPLTLAELVHSFRPERLPRTPIVAGEAALREALGLG
Sequences:
>Translated_315_residues MSQVRGRFAPSPTGRMHLGNIRSALLGWLQARAAHGRFLLRIEDLDRARCKPQYVDDLLRDMEWLGLDWDEQPVFQSQRD GLYRDAQARLEQAGRVYPCFCTRAEIARAASAPHGLSDEGPRYPGTCAHLTREQISERARTRPPAYRFRAVPGEVRFVDG LQGSYSQDVDAVVGDFVVRRNDGVASYQLAVVVDDAATDITHVLRGDDLLSSTPRQLQLYAALSLRAPDFLHVPLVLGED GKRLAKREGAFALAELRERGVAPERVLGLLASWSGWGDGGPLTLAELVHSFRPERLPRTPIVAGEAALREALGLG >Mature_314_residues SQVRGRFAPSPTGRMHLGNIRSALLGWLQARAAHGRFLLRIEDLDRARCKPQYVDDLLRDMEWLGLDWDEQPVFQSQRDG LYRDAQARLEQAGRVYPCFCTRAEIARAASAPHGLSDEGPRYPGTCAHLTREQISERARTRPPAYRFRAVPGEVRFVDGL QGSYSQDVDAVVGDFVVRRNDGVASYQLAVVVDDAATDITHVLRGDDLLSSTPRQLQLYAALSLRAPDFLHVPLVLGEDG KRLAKREGAFALAELRERGVAPERVLGLLASWSGWGDGGPLTLAELVHSFRPERLPRTPIVAGEAALREALGLG
Specific function: Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5- dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble positi
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=302, Percent_Identity=37.7483443708609, Blast_Score=189, Evalue=2e-48, Organism=Escherichia coli, GI1788743, Length=298, Percent_Identity=38.5906040268456, Blast_Score=202, Evalue=3e-53, Organism=Escherichia coli, GI226510925, Length=306, Percent_Identity=37.2549019607843, Blast_Score=172, Evalue=3e-44, Organism=Caenorhabditis elegans, GI71993394, Length=280, Percent_Identity=36.0714285714286, Blast_Score=163, Evalue=9e-41, Organism=Saccharomyces cerevisiae, GI6324540, Length=284, Percent_Identity=35.9154929577465, Blast_Score=186, Evalue=4e-48, Organism=Saccharomyces cerevisiae, GI6324742, Length=127, Percent_Identity=30.7086614173228, Blast_Score=70, Evalue=6e-13, Organism=Drosophila melanogaster, GI24665321, Length=285, Percent_Identity=39.6491228070175, Blast_Score=191, Evalue=5e-49,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR022380 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: 6.1.1.17
Molecular weight: Translated: 34825; Mature: 34694
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQVRGRFAPSPTGRMHLGNIRSALLGWLQARAAHGRFLLRIEDLDRARCKPQYVDDLLR CCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCHHHHHHHHH DMEWLGLDWDEQPVFQSQRDGLYRDAQARLEQAGRVYPCFCTRAEIARAASAPHGLSDEG HHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCC PRYPGTCAHLTREQISERARTRPPAYRFRAVPGEVRFVDGLQGSYSQDVDAVVGDFVVRR CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHEEC NDGVASYQLAVVVDDAATDITHVLRGDDLLSSTPRQLQLYAALSLRAPDFLHVPLVLGED CCCCCEEEEEEEECCHHHHHHHHHCCCHHHHCCCHHEEEEEHHCCCCCCEEEEEEEECCC GKRLAKREGAFALAELRERGVAPERVLGLLASWSGWGDGGPLTLAELVHSFRPERLPRTP CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC IVAGEAALREALGLG CEECHHHHHHHHCCC >Mature Secondary Structure SQVRGRFAPSPTGRMHLGNIRSALLGWLQARAAHGRFLLRIEDLDRARCKPQYVDDLLR CCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCHHHHHHHHH DMEWLGLDWDEQPVFQSQRDGLYRDAQARLEQAGRVYPCFCTRAEIARAASAPHGLSDEG HHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCCCCCCCC PRYPGTCAHLTREQISERARTRPPAYRFRAVPGEVRFVDGLQGSYSQDVDAVVGDFVVRR CCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCHHHHHHHHHHEEC NDGVASYQLAVVVDDAATDITHVLRGDDLLSSTPRQLQLYAALSLRAPDFLHVPLVLGED CCCCCEEEEEEEECCHHHHHHHHHCCCHHHHCCCHHEEEEEHHCCCCCCEEEEEEEECCC GKRLAKREGAFALAELRERGVAPERVLGLLASWSGWGDGGPLTLAELVHSFRPERLPRTP CHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCC IVAGEAALREALGLG CEECHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-glutamate; tRNA(Glu)
Specific reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu)
General reaction: Aminoacylation; Esterification [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA