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The map label for this gene is ykfC [H]

Identifier: 108758983

GI number: 108758983

Start: 4209761

End: 4211071

Strand: Direct

Name: ykfC [H]

Synonym: MXAN_3607

Alternate gene names: 108758983

Gene position: 4209761-4211071 (Clockwise)

Preceding gene: 108757086

Following gene: 108760647

Centisome position: 46.06

GC content: 64.53

Gene sequence:

>1311_bases
ATGACAAAGCCCACCATCAGTCCGCAGGAACTCCGCGCGAGGATAGGCCATCGGGCGAAATCCGCCCCGACGCATCGCTT
CTGGGGATTGTACGTCCACGTCCTCAAACCCGAAGTTCTCGAAGCCGCCTATCTGGAAGCCCGGCGCAACGGTGGGGCTC
CCGGTCAGGACGGCATCACCTTCGAGCACATCGAGGAGCGCGGACGAGCAGGGTTCCTCGGTGCAGTCGCCGAGGAACTC
CGCACGGGCACGTACCGCCCCAGACCGTACCGACGAAGAGAGATTCCGAAGGAGGGCGGCAAGGTGCGCGTCATCTCGAT
TCCGTCGATTCGAGACCGCGTCGTCCAGGGCGCCCTCCGGCTGGTACTGGAGCCCATCTTCGAGGCTGACTTCTCGGGCA
GTTCCTTCGGGGCGAGACCGGGTCGGTCGGCGCATGAAGCCATCGACACCGTGCGCCAAGGGTTGCGACGGCGCAGGCAC
CGCGTAGTCGACGTGGATTTGAAAGCCTACTTCGACAGCATCCGGCATGCGCCGCTGCTGGAGCGGGTGGCACGAAGAGT
CCAGGACGGCGAGGTGCTGGCGCTGGTGAAGCAATTCCTCAGGAGCACGGGGGACAGGGGAATCCCGCAGGGCTCGCCCC
TGTCCCCGCTGCTGGCCAACATCGCGCTGAACGACCTCGACCATGTCCTGGACCGAGGACGAGGCTTCCTCACCTATGCG
CGGTACTTGGACGACATGGTGGTGCTCGCCCCCGACTCCGAGAAGGGGCGGAGGTGGGCAGCACGGGCGCTGGAGCGCAT
CCGCCAGGAGGCGGAGGCACTCGGCGTGTCGCTCAACAAGGAGAAGACGCGGACGGTGACGATGACCGACCGCAACGCCT
CCTTCGCGTTCCTGGGTTTCGACTTCCGCTGGAAGCGGAGCCCGAAGACTGGAACGTGGTACCCAAACACGAACCCTCGA
CGAAAGAAGGTCACCGAAGTTCTGCGCCGCGTGCGCCACGTCCTGCGGGACAGCCGAGCACTCGCAGTGCAGTCAGCCGT
GGTGGAGGTGAATGCCATTGTCCGCGGCTGGGTGAACTACTTTCGGTGGGGCAACTCGTACCAGGCGCTCGACAGGGTGA
AACACCACGTCGAACTCAAGGTGAGGCGGTTCGCGGCGAAGAGAGCGAAGCGAGGGGGCTTCGGTTGGAAGCGGTGGAGT
AAGGACGTCGTGTACGGAAGCTGGGGGCTCTTTGATGACTACCGGGTGAGGTACTACGCCATCCTGAAAGCTGGCTCCCC
GCCGAGCGGAAGCATAACCCCGGTGAGATGA

Upstream 100 bases:

>100_bases
CGACGGATGGGGCCGTAGTAGCGACGAAGCGGGGTAATGCCCGTGGAGCGAAGGGCCCCTACCGGAGGTACTCCGAGCAG
AGGAGCGAGGCGGGAGCGGG

Downstream 100 bases:

>100_bases
CGCCTTCGCGGTGAGCCGGATGCGGGAAACCCGCCTGTCCGGTTCGATGTGGCGGGGACCGGAGACGGAGTGATGGCGCG
CTCTACACGGGCACGAAGCC

Product: group II intron maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MTKPTISPQELRARIGHRAKSAPTHRFWGLYVHVLKPEVLEAAYLEARRNGGAPGQDGITFEHIEERGRAGFLGAVAEEL
RTGTYRPRPYRRREIPKEGGKVRVISIPSIRDRVVQGALRLVLEPIFEADFSGSSFGARPGRSAHEAIDTVRQGLRRRRH
RVVDVDLKAYFDSIRHAPLLERVARRVQDGEVLALVKQFLRSTGDRGIPQGSPLSPLLANIALNDLDHVLDRGRGFLTYA
RYLDDMVVLAPDSEKGRRWAARALERIRQEAEALGVSLNKEKTRTVTMTDRNASFAFLGFDFRWKRSPKTGTWYPNTNPR
RKKVTEVLRRVRHVLRDSRALAVQSAVVEVNAIVRGWVNYFRWGNSYQALDRVKHHVELKVRRFAAKRAKRGGFGWKRWS
KDVVYGSWGLFDDYRVRYYAILKAGSPPSGSITPVR

Sequences:

>Translated_436_residues
MTKPTISPQELRARIGHRAKSAPTHRFWGLYVHVLKPEVLEAAYLEARRNGGAPGQDGITFEHIEERGRAGFLGAVAEEL
RTGTYRPRPYRRREIPKEGGKVRVISIPSIRDRVVQGALRLVLEPIFEADFSGSSFGARPGRSAHEAIDTVRQGLRRRRH
RVVDVDLKAYFDSIRHAPLLERVARRVQDGEVLALVKQFLRSTGDRGIPQGSPLSPLLANIALNDLDHVLDRGRGFLTYA
RYLDDMVVLAPDSEKGRRWAARALERIRQEAEALGVSLNKEKTRTVTMTDRNASFAFLGFDFRWKRSPKTGTWYPNTNPR
RKKVTEVLRRVRHVLRDSRALAVQSAVVEVNAIVRGWVNYFRWGNSYQALDRVKHHVELKVRRFAAKRAKRGGFGWKRWS
KDVVYGSWGLFDDYRVRYYAILKAGSPPSGSITPVR
>Mature_435_residues
TKPTISPQELRARIGHRAKSAPTHRFWGLYVHVLKPEVLEAAYLEARRNGGAPGQDGITFEHIEERGRAGFLGAVAEELR
TGTYRPRPYRRREIPKEGGKVRVISIPSIRDRVVQGALRLVLEPIFEADFSGSSFGARPGRSAHEAIDTVRQGLRRRRHR
VVDVDLKAYFDSIRHAPLLERVARRVQDGEVLALVKQFLRSTGDRGIPQGSPLSPLLANIALNDLDHVLDRGRGFLTYAR
YLDDMVVLAPDSEKGRRWAARALERIRQEAEALGVSLNKEKTRTVTMTDRNASFAFLGFDFRWKRSPKTGTWYPNTNPRR
KKVTEVLRRVRHVLRDSRALAVQSAVVEVNAIVRGWVNYFRWGNSYQALDRVKHHVELKVRRFAAKRAKRGGFGWKRWSK
DVVYGSWGLFDDYRVRYYAILKAGSPPSGSITPVR

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=206, Percent_Identity=30.5825242718447, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6226520, Length=335, Percent_Identity=26.2686567164179, Blast_Score=104, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49732; Mature: 49600

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPTISPQELRARIGHRAKSAPTHRFWGLYVHVLKPEVLEAAYLEARRNGGAPGQDGIT
CCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCC
FEHIEERGRAGFLGAVAEELRTGTYRPRPYRRREIPKEGGKVRVISIPSIRDRVVQGALR
HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHH
LVLEPIFEADFSGSSFGARPGRSAHEAIDTVRQGLRRRRHRVVDVDLKAYFDSIRHAPLL
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCHHH
ERVARRVQDGEVLALVKQFLRSTGDRGIPQGSPLSPLLANIALNDLDHVLDRGRGFLTYA
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYLDDMVVLAPDSEKGRRWAARALERIRQEAEALGVSLNKEKTRTVTMTDRNASFAFLGF
HHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEE
DFRWKRSPKTGTWYPNTNPRRKKVTEVLRRVRHVLRDSRALAVQSAVVEVNAIVRGWVNY
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FRWGNSYQALDRVKHHVELKVRRFAAKRAKRGGFGWKRWSKDVVYGSWGLFDDYRVRYYA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCCCCEEEEE
ILKAGSPPSGSITPVR
EEECCCCCCCCCCCCC
>Mature Secondary Structure 
TKPTISPQELRARIGHRAKSAPTHRFWGLYVHVLKPEVLEAAYLEARRNGGAPGQDGIT
CCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCC
FEHIEERGRAGFLGAVAEELRTGTYRPRPYRRREIPKEGGKVRVISIPSIRDRVVQGALR
HHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHHHHH
LVLEPIFEADFSGSSFGARPGRSAHEAIDTVRQGLRRRRHRVVDVDLKAYFDSIRHAPLL
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHCCCHHH
ERVARRVQDGEVLALVKQFLRSTGDRGIPQGSPLSPLLANIALNDLDHVLDRGRGFLTYA
HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RYLDDMVVLAPDSEKGRRWAARALERIRQEAEALGVSLNKEKTRTVTMTDRNASFAFLGF
HHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEEEE
DFRWKRSPKTGTWYPNTNPRRKKVTEVLRRVRHVLRDSRALAVQSAVVEVNAIVRGWVNY
CEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
FRWGNSYQALDRVKHHVELKVRRFAAKRAKRGGFGWKRWSKDVVYGSWGLFDDYRVRYYA
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECCCCCCCCCEEEEE
ILKAGSPPSGSITPVR
EEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]