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The map label for this gene is rnhB [H]

Identifier: 108563693

GI number: 108563693

Start: 1315480

End: 1316094

Strand: Reverse

Name: rnhB [H]

Synonym: HPAG1_1268

Alternate gene names: 108563693

Gene position: 1316094-1315480 (Counterclockwise)

Preceding gene: 108563694

Following gene: 108563690

Centisome position: 82.44

GC content: 43.09

Gene sequence:

>615_bases
ATGACTTTAGGCATTGATGAAGCGGGTAGGGGGTGTTTGGCCGGGTCGCTTTTTGTGGCGGGGGTGGCGTGCAGTGAAAA
AACAGCCTTAGAATTTCTAAAAATGGGTTTAAAAGACAGCAAGAAGCTCAGCCAAAAAAAGCGCTTTTTCTTGGAAGATA
AGATCAAAACGCATGGTGAGGTAGGGTTTTTCGTGGTTAAAAAAAGCGCAGAAGCAATTGATAGCTTGGGCTTAGGGGCG
TGTTTGAAACTCGCTATTGAAGAAATTTTAGAAAATGGTTGCTCTTTAGCCAATGAAATAAAAATAGATGGCAACACGGC
GTTTGGCTTGAACAAACGCTACCCTAATATACAAACCATCATCAAGGGCGATGAAACAATCGCTCAAATCGCTATGGCGT
CTGTTTTAGCGAAAGCTGCTAAGGACAGAGAAATGCTAGAGTTGCACGCTTTGTTTAAGGAATACGGCTGGGATAAGAAT
TGCGGGTATGGGACTAAACAACATATAGAAGCGATCATTAAGCTAGGGGCTACGCCTTTTCATCGGCATAGCTTCACGCT
TAAAAACCGCATCTTAAATCCCAAACTCTTAGAGGTGGAACAACGCCTTGTTTAA

Upstream 100 bases:

>100_bases
AAACTTTGAAAAAGAATTAACAGAGTTTATTAAGAAGATAAGAGGAAACAGGATAAGAGCGTGTGAGCAGGAATTTTGAT
ACCGGTTTGGTTGCGTATCA

Downstream 100 bases:

>100_bases
AACGGTGCTGAGATGGGTAGCGTTCGCTGAAGAAAGGTCGATGCGTTTGGCTTTAAAGTAAGCGATTAAGTCTTCAGGCT
GAATGAAAGGGAATTGCACC

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTLGIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGFFVVKKSAEAIDSLGLGA
CLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKN
CGYGTKQHIEAIIKLGATPFHRHSFTLKNRILNPKLLEVEQRLV

Sequences:

>Translated_204_residues
MTLGIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGFFVVKKSAEAIDSLGLGA
CLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKN
CGYGTKQHIEAIIKLGATPFHRHSFTLKNRILNPKLLEVEQRLV
>Mature_203_residues
TLGIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGEVGFFVVKKSAEAIDSLGLGAC
LKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTIIKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNC
GYGTKQHIEAIIKLGATPFHRHSFTLKNRILNPKLLEVEQRLV

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=193, Percent_Identity=34.1968911917098, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22469; Mature: 22337

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGE
CCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
VGFFVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTI
EEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEECCCCCCCCHHEE
IKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF
ECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
HRHSFTLKNRILNPKLLEVEQRLV
HHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
TLGIDEAGRGCLAGSLFVAGVACSEKTALEFLKMGLKDSKKLSQKKRFFLEDKIKTHGE
CCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
VGFFVVKKSAEAIDSLGLGACLKLAIEEILENGCSLANEIKIDGNTAFGLNKRYPNIQTI
EEEEEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCHHHEEEECCCEEECCCCCCCCHHEE
IKGDETIAQIAMASVLAKAAKDREMLELHALFKEYGWDKNCGYGTKQHIEAIIKLGATPF
ECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
HRHSFTLKNRILNPKLLEVEQRLV
HHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]