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The map label for this gene is secY [H]

Identifier: 108563670

GI number: 108563670

Start: 1303473

End: 1304735

Strand: Reverse

Name: secY [H]

Synonym: HPAG1_1245

Alternate gene names: 108563670

Gene position: 1304735-1303473 (Counterclockwise)

Preceding gene: 108563671

Following gene: 108563669

Centisome position: 81.73

GC content: 42.12

Gene sequence:

>1263_bases
ATGAATAAAGCTATTGCTAGTAAGATACTCATTACTTTGGGTTTTTTATTTCTCTACAGAGTCTTAGCTTATATCCCCAT
TCCTGGCGTAGATTTAGCAGCGATCAAGGCTTTTTTTGACAGCAATTCCAACAACGCTTTGGGGTTGTTTAACATGTTTA
GCGGGAATGCGGTTTCTCGCTTGAGCATCATCTCTTTGGGTATCATGCCCTATATCACTTCTTCAATTATCATGGAGCTT
TTGAGCGCGACTTTCCCCAACCTGGCTAAAATGAAAAAAGAGCGAGACGGCATGCAAAAATACATGCAAATCGTGCGCTA
TTTGACCATTTTAATCACCCTAATCCAAGCGGTGAGCGTATCAGTGGGCTTAAGGAGCATTAGTGGTGGTGCGAATGGAG
CGATCATGATTGATATGCAAGTCTTTATGATCGTTTCAGCGTTTTCTATGCTTACAGGGACGATGCTACTCATGTGGATA
GGGGAGCAAATCACACAAAGGGGCGTGGGGAATGGGATCAGTCTCATTATTTTTGCCGGGATTGTTTCAGGGATCCCATC
GGCTATTTCAGGCACATTCAACTTGGTCAATACGGGCGTTATTAATATCTTAATGCTCATTGGTATTGTGCTGATTGTTT
TAGCGACTATTTTTGCGATTATCTATGTGGAATTAGCCGAGCGCAGAATCCCTATTTCTTATGCGCGTAAAGTGGTGATG
CAAAACCAAAACAAGCGCATCATGAATTACATTCCTATTAAGTTGAATCTAAGCGGGGTGATCCCCCCTATTTTCGCTTC
AGCGTTGCTCGTGTTCCCTTCTACGATTTTGCAGCAAGCCACAAGCAATAAAACCTTGCAAGCGGTTGCGGATTTTTTAA
GCCCGCAAGGGTATGCGTATAATATTTTGATGTTCTTACTCATTATCTTTTTTGCTTACTTTTATTCTTCTATCGTGTTC
AATTCTAAGGATATCGCGGATAATTTAAGGCGTAATGGTGGGTATATTCCAGGGCTTAGGCCTGGAGAGGGGACTTCATC
GTTTTTAAATTCTGTAGCGAGCAAGCTCACTTTGTGGGGTTCATTGTATTTAGCGCTCATTTCTACCGTGCCTTGGATTT
TGGTTAAGGCTATGGGCGTGCCTTTTTACTTTGGAGGCACGGCGGTGCTGATTGTGGTTCAAGTCGCTATTGATACCATG
AAAAAGATTGAAGCGCAAATTTATATGAGCAAGTATAAAACTTTAAGCGCGGTAGGCTTTTAA

Upstream 100 bases:

>100_bases
GACGCTAAAAACCTAGCTTCTAAAATTAAAGATGAGAGAATCAAAACAAGCGGGCAGAAGTAATGCCCCTATCAGCTTGA
TTTAAGAGGAATAAGTTAAT

Downstream 100 bases:

>100_bases
TGGCAATCTCTATTAAAAGCCCAAAAGAAATCAAAGCTCTAAGAAAAGCCGGGGAATTAACCGCTCAAGCGTTAGCCCTT
TTAGAGCGAGAAGTAAGGCC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF

Sequences:

>Translated_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF
>Mature_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQIYMSKYKTLSAVGF

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=418, Percent_Identity=40.4306220095694, Blast_Score=298, Evalue=3e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 45830; Mature: 45830

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAY
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQIYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKAFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGANGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVINILMLIGIVLIVLATIFAIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAVADFLSPQGYAY
CCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGLRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQIYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]