Click here to switch to the map view.

The map label for this gene is rpoA [H]

Identifier: 108563663

GI number: 108563663

Start: 1299836

End: 1300870

Strand: Reverse

Name: rpoA [H]

Synonym: HPAG1_1238

Alternate gene names: 108563663

Gene position: 1300870-1299836 (Counterclockwise)

Preceding gene: 108563664

Following gene: 108563662

Centisome position: 81.49

GC content: 41.06

Gene sequence:

>1035_bases
ATGAAAGTTATTAAAACAGCACCTTTGATCCCATCAGAAATTAAGGTGCTAGAGAAAGAGGGCAATCGGGTTAAGATTTC
TCTGGCTCCATTTGAGTTTGGTTACGCTGTTACGCTCGCTCACCCTATTAGAAGACTCTTGCTTTTAAGCTCTGTGGGGT
ATGCTCCCATAGGTTTAAAGATTGAAGGCGTCCATCATGAGTTTGACTCATTAAGGGGGGTTACTGAAGATGTGTCGCTT
TTTATCATGAATTTAAAGAATATCCGTTTTATAGCCAAGGCGTTAGTGGGGCAGGATAGCTCTTTAGAAAACCAATCGGT
TGTGGTGGATTATTCTTTTAAAGGGTCTATGGAGCTTAGGGCTAGGGATTTGAATTCTGATCATATAGAAATCGTCAATC
CTGAAATGCCTCTAGCCACAATCAACGAAGACGCTCAATTGAATTTTTCGCTCATTATCTATAAAGGAATGGGGTATGTC
CCAAGCGAAACTACAAGAGAATTGATGCCTGAGGGCTACATGCCACTAGACGGCTCTTTCACGCCGATTAAAAAGGTCGT
TTATGAGATTGAAAATGTTTTGGTTGAGGGCGATCCCAACTATGAAAAAATCATTTTTGATATTGAAACAGACGGGCAGA
TTGACCCTTATAAAGCGTTTTTGTCAGCGGTGAAAGTGATGAGCAAGCAACTAGGCGTTTTTGGCGAAAGACCCATTGCT
AACACGGAGTATTCAGGCGATTACGCCCAAAGAGATGACGCTAAAGATTTGAGCGCTAAGATTGAGAGCATGAATTTGAG
CGCTAGGTGTTTTAATTGCTTGGATAAAATCGGCATCAAGTATGTGGGCGAACTCGTGTTGATGAGCGAAGAAGAGCTTA
AGGGCGTGAAAAACATGGGTAAAAAATCCTATGATGAAATCGCTGAAAAATTGAATGATTTGGGCTATCCGGTAGGCACA
GAATTAAGCCCTGAACAAAGAGAGAGTTTAAAGAAAAGATTAGAAAAATTAGAAGACAAAGGAGGTAACGACTGA

Upstream 100 bases:

>100_bases
AATACGGCATCTTCACCCGCTACCCTGAAAGAGAAGAAGTGGTTGTCCCTATTGAAGAAAGACTCATTGTAGAATTGTAT
TCTAAGTAAGGGGTTAGAGC

Downstream 100 bases:

>100_bases
TGAGACACAAACACGGATACCGCAAGCTTGGGAGAACCAGCTCGCACAGAAAGGCGTTATTAAAGAATTTAGCGATCGCT
TTGATTGAGCATAACAAAAT

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha [H]

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLKIEGVHHEFDSLRGVTEDVSL
FIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGSMELRARDLNSDHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYV
PSETTRELMPEGYMPLDGSFTPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGT
ELSPEQRESLKKRLEKLEDKGGND

Sequences:

>Translated_344_residues
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLKIEGVHHEFDSLRGVTEDVSL
FIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGSMELRARDLNSDHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYV
PSETTRELMPEGYMPLDGSFTPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGT
ELSPEQRESLKKRLEKLEDKGGND
>Mature_344_residues
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLKIEGVHHEFDSLRGVTEDVSL
FIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGSMELRARDLNSDHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYV
PSETTRELMPEGYMPLDGSFTPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGT
ELSPEQRESLKKRLEKLEDKGGND

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates [H]

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family [H]

Homologues:

Organism=Escherichia coli, GI1789690, Length=321, Percent_Identity=29.9065420560748, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- ProDom:   PD001179 [H]

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 38486; Mature: 38486

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEE
IEGVHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGSMELR
EECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEE
ARDLNSDHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYVPSETTRELMPEGYMPLDGSF
EECCCCCCEEEECCCCCEEECCCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCC
TPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
CHHHHHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMG
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHCC
KKSYDEIAEKLNDLGYPVGTELSPEQRESLKKRLEKLEDKGGND
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVIKTAPLIPSEIKVLEKEGNRVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPIGLK
CCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEE
IEGVHHEFDSLRGVTEDVSLFIMNLKNIRFIAKALVGQDSSLENQSVVVDYSFKGSMELR
EECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEE
ARDLNSDHIEIVNPEMPLATINEDAQLNFSLIIYKGMGYVPSETTRELMPEGYMPLDGSF
EECCCCCCEEEECCCCCEEECCCCCEEEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCC
TPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGERPIA
CHHHHHHHHHHHHEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
NTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMG
CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHCC
KKSYDEIAEKLNDLGYPVGTELSPEQRESLKKRLEKLEDKGGND
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA