Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
---|---|
Accession | NC_008086 |
Length | 1,596,366 |
Click here to switch to the map view.
The map label for this gene is 108563615
Identifier: 108563615
GI number: 108563615
Start: 1254319
End: 1255341
Strand: Reverse
Name: 108563615
Synonym: HPAG1_1190
Alternate gene names: NA
Gene position: 1255341-1254319 (Counterclockwise)
Preceding gene: 108563616
Following gene: 108563614
Centisome position: 78.64
GC content: 37.34
Gene sequence:
>1023_bases ATGTATCGTAAAGATTTGGACCATTATTTAAAACAACGACTCCCTAAAGCGGTGTTTTTGTATGGGGAGTTTGATTTTTT TATCCATTATTATATTCAAACGATTAGCGCGCTTTTTAAATGCAATAACCCTGACACAGAAACTTCGCTTTTTTATGCGA GCGATTATGAAAAAAGCCAGATTGCGACCCTTTTAGAGCAGGATTCTTTATTTGGAGGGAGCAGTTTAGTCGTTTTAAAA CTGGATTTTGCGCTGCATAAGAAATTTAAGGAAAATGACATCAATCTTTTTTTAAAGGCTTTAGAGCGGCCTAGCCATAA CAGGCTCATCATAGGGCTTTATAACGCTAAAAGCGACACCACAAAATACAAATACACTAGCGATGCTATCGTTAAATTTT TCCAAAAAAGCCCCTTGAAAGATGAAGCGGTTTATGCGCGCTTTTTTATCCCTAAAACTTGGGAGAGTTTGAAGTTCTTA CAAGAAAGGGCTAATTTTTTGCATTTAGACATCAGCGGCCATCTTTTAAACGCTCTTTTTGAAACCAATAACGAAGACTT AAGCGTTTCGTTTAACGATTTAGACAAGCTAGCGGTTTTAAAGGCGCCCATCACTTTAGAAGACATTCAAGAATTAAGCT CTAATGCGGGGGATATGGATTTGCAAAAGCTCATTTTAGGGCTTTTTTTGAAAAAAAGCGTGCTTGATATTTATGATTAT TTGTTAAAAGAGGGCAAAAAAGATGCGGATATTTTAAGGGGGTTAGAGCGCTATTTTTACCAGCTTTTTTTATTTTTCGC CCACATTAAAACGACCGGTTTAGTGGACGCTAAAGAGGTTTTAGGCTACGCTCCCCCTAAAGAAATTGCTGAAAATTACG CTAAAAACGCCCTGCGTTTGAAAGAAGCCGGCTATAAGAGGGTTTTTGAAATTTTTAGGTTATGGCACCTTCAAAGCATG CAAGGGCAAAAGGAATTGGGCTTTTTGTATTTGACCTCCATTCAAAAAATCATTAACCCCTAA
Upstream 100 bases:
>100_bases AAGGTTTTTAAGCCTTTAGAAAAAGTGCGCGTTACAATCACGCATGCGGATTTGATTTTAGGGCAAGTTAGAGGCGAAAT CACAGAAAGGATTAAAGAGC
Downstream 100 bases:
>100_bases AAAATGAACTGGTTTTGAGCTTTAATATTACTAATAAAACTGAATTTAATCCAAAAACAAGCGAAAGCAAGGTATAATTT AAAGTTTTTTAGACCTTGCT
Product: DNA polymerase III subunit delta
Products: diphosphate; DNAn+1
Alternate protein names: NA
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQDSLFGGSSLVVLK LDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVKFFQKSPLKDEAVYARFFIPKTWESLKFL QERANFLHLDISGHLLNALFETNNEDLSVSFNDLDKLAVLKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPPKEIAENYAKNALRLKEAGYKRVFEIFRLWHLQSM QGQKELGFLYLTSIQKIINP
Sequences:
>Translated_340_residues MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQDSLFGGSSLVVLK LDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVKFFQKSPLKDEAVYARFFIPKTWESLKFL QERANFLHLDISGHLLNALFETNNEDLSVSFNDLDKLAVLKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPPKEIAENYAKNALRLKEAGYKRVFEIFRLWHLQSM QGQKELGFLYLTSIQKIINP >Mature_340_residues MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQIATLLEQDSLFGGSSLVVLK LDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDTTKYKYTSDAIVKFFQKSPLKDEAVYARFFIPKTWESLKFL QERANFLHLDISGHLLNALFETNNEDLSVSFNDLDKLAVLKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPPKEIAENYAKNALRLKEAGYKRVFEIFRLWHLQSM QGQKELGFLYLTSIQKIINP
Specific function: Could be the functional equivalent of DNA polymerase III delta subunit (holA) [H]
COG id: COG1466
COG function: function code L; DNA polymerase III, delta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010372 [H]
Pfam domain/function: PF06144 DNA_pol3_delta [H]
EC number: 2.7.7.7
Molecular weight: Translated: 39551; Mature: 39551
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQ CCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT HHHHHHHHCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCC TKYKYTSDAIVKFFQKSPLKDEAVYARFFIPKTWESLKFLQERANFLHLDISGHLLNALF CCEEECHHHHHHHHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCEEEEEEHHHHHHHHH ETNNEDLSVSFNDLDKLAVLKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY HCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPPKEIAENYAKNALRL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHH KEAGYKRVFEIFRLWHLQSMQGQKELGFLYLTSIQKIINP HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYRKDLDHYLKQRLPKAVFLYGEFDFFIHYYIQTISALFKCNNPDTETSLFYASDYEKSQ CCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHH IATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNAKSDT HHHHHHHHCCCCCCCEEEEEECHHHHHHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCC TKYKYTSDAIVKFFQKSPLKDEAVYARFFIPKTWESLKFLQERANFLHLDISGHLLNALF CCEEECHHHHHHHHHHCCCCCHHHEEEEECCCHHHHHHHHHHHCCEEEEEEHHHHHHHHH ETNNEDLSVSFNDLDKLAVLKAPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDY HCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH LLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLVDAKEVLGYAPPKEIAENYAKNALRL HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHH KEAGYKRVFEIFRLWHLQSMQGQKELGFLYLTSIQKIINP HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]