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The map label for this gene is ssb [H]

Identifier: 108563613

GI number: 108563613

Start: 1253192

End: 1253737

Strand: Reverse

Name: ssb [H]

Synonym: HPAG1_1188

Alternate gene names: 108563613

Gene position: 1253737-1253192 (Counterclockwise)

Preceding gene: 108563614

Following gene: 108563612

Centisome position: 78.54

GC content: 43.41

Gene sequence:

>546_bases
ATGTTTAATAAAGTGATTATGGTAGGGCGTTTGACCAGGAATGTGGAGTTGAAATATTTGCCTAGCGGTTCGGCTGCGGC
TACAATAGGTTTAGCCACAAGCAGGCGTTTTAAGAAACAAGACGGCACGCTAGGCGAAGAGGTGTGCTTTATAGATGCGC
GTTTGTTTGGGCGAACGGCTGAAATCGCTAACCAGTATTTGAGCAAGGGTTCAAGCGTTTTGATAGAAGGGCGTTTGACT
TATGAGAGCTGGATGGATCAAACGGGCAAAAAAAATTCCCGCCACACTATCACAGCGGACTCGTTGCAATTTATGGATAA
AAAGTCAGACAATCCCCAAGCAAACGCTATGCAAGATAGTATAATGCATGAGAATTTCAACAACGCTTATCCTGCTAATC
ATAACGCTCCCAGCCAAGATCCTTTTAACCAAGCCCAAAGCTATCCACAAAACGCTTACGCTAAAGAGAATTTACAAGCA
CAGCCGTCCAAGTATCAAAACAGCGTGCCTGAAATCAATATTGATGAAGAAGAAATCCCCTTTTAA

Upstream 100 bases:

>100_bases
ATCACACGCCAAAGAAAAACACGAAAAAACCGAACACACGCATTCTCACCACCTAGAGGAAGCAGAAAGCGTAGGATCTC
ATAGCGAATAAGGGCTTATC

Downstream 100 bases:

>100_bases
GGGTTAAAATTAAGGAGACATTATGGAAAGAAAACGCTATTCAAAACGCTATTGCAAATACACTGAAGCTAAAATCAGCT
TTATTGACTATAAAGATTTA

Product: single-stranded DNA-binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENFNNAYPANHNAPSQDPFNQAQSYPQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF

Sequences:

>Translated_181_residues
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENFNNAYPANHNAPSQDPFNQAQSYPQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF
>Mature_181_residues
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHENFNNAYPANHNAPSQDPFNQAQSYPQNAYAKENLQA
QPSKYQNSVPEINIDEEEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Escherichia coli, GI1790494, Length=90, Percent_Identity=45.5555555555556, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 20345; Mature: 20345

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA
CCCCEEEEEECCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCEEEEHHHHHCCHH
EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDS
HHHHHHHHCCCEEEEEEEECHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHH
IMHENFNNAYPANHNAPSQDPFNQAQSYPQNAYAKENLQAQPSKYQNSVPEINIDEEEIP
HHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHCCCCCCCCCHHCCC
F
C
>Mature Secondary Structure
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTA
CCCCEEEEEECCCCEEEEECCCCCCEEEEEHHHHHHHHHCCCCCCCCEEEEHHHHHCCHH
EIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDS
HHHHHHHHCCCEEEEEEEECHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCCHHHHHHH
IMHENFNNAYPANHNAPSQDPFNQAQSYPQNAYAKENLQAQPSKYQNSVPEINIDEEEIP
HHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHCCCCCCCHHHHCCCCCCCCCHHCCC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]