Click here to switch to the map view.

The map label for this gene is 108563611

Identifier: 108563611

GI number: 108563611

Start: 1250171

End: 1252387

Strand: Reverse

Name: 108563611

Synonym: HPAG1_1186

Alternate gene names: NA

Gene position: 1252387-1250171 (Counterclockwise)

Preceding gene: 108563612

Following gene: 108563610

Centisome position: 78.45

GC content: 44.84

Gene sequence:

>2217_bases
ATGAAAAAAACCCTTTTACTCTCTCTCTCTCTCTCTCTCTCGTTTTTGCTCCACGCTGAAGACGACGGCTTTTACACAAG
CGTAGGCTATCAAATCGGTGAAGCCGCTCAAATGGTGAAAAACACCAAAGGCATTCAAGATCTTTCAGACAATTATGAAA
AGCTGAACAATCTTTTAACCCGATACAGCACCCTAAACACCCTTATCAAATTGTCCGCTGATCCGAGCGCTGTCAGTGGC
GCGATCAACAATTTGAATGCGGGCGCGACGGGTTTGCTCAAAGAAAAAACCAACTCCCCGGCTTATCAAGCCGTCTCTTT
GGCATTAAACGCCGCAGTGGGCTTGTGGAATACCATCGGCTATGCGGTCATGTGCGGGAACGGCAATGGCACAGGGAGTG
GGCCTGGCAGCGTGGTTTTTGATGGAGAGCCAGGACAGGGATCCACGCAAATTACTTGCAACCGCTATGAATCAACTGGG
CCTGGTAAAAGCATGTCTATTGATGAATTCAAGAAACTCAATGAAGCCTATCAAATCATCCAACAAGCTTTAAAGAATCA
AAATGGGTTTCCTGAATTAGGCGGGCAAGGCACAACAGTGAATGTTCATTATGAATACGAATGCAAACAAACTGCTGATA
TCAACGGCGGTGTGAATCAGTTCTGCCAGGCTAAAAATGGTAGTAGTAGTAGCGGTAGTAGCGGCAGTAATGGCACTAGC
ACGCAAACCACCACTCAAGACGGCGTAACGATCGCCACTACCTATAATAATAACAAAGCCACCGTCGATTTTAGCATCAC
CAATAACGCTCAACAGCTCTTAAATCAAGCGGCAAACATCATGCAAGTCCTTAACACGCAATGCCCTCTCGTGCGATCCA
CGGGTAATGAAAGTGCTGCAGGGGGTGGCCAACCATGGGGTTTAAGCACAAGTGGGAATGCGTGCCAAATCTTCCAACAA
GAATTTAGCGCCGTTACTAGCATGATCAAAAACGCGCAAGAAATCGTCGCGCAAAGCAAAATCGCTAACGCTAACCAACA
AGCAGAAATAACTAACCCCAGTAACTTCAACCCTTTCACAGACGCTGGCTTTGCGCAAGACATGCTCAAAAACGCAAAAG
CGCAAGCAGAGATGTTCAATTTAGCTGAGCAAGTGAGAAAGAATTTGGAAGTCATGGAAAACAACAATAACGTTAATGCG
GAATTATCAGGATTTGGGAAAGAAATGACCAATTTTGTTAGCGCCTTTTTGGCAACCTGCAAAAAAGATGGGACATTACC
TAATGCAGGGGTAACTTCTAACACTTGGGGAGCGGGTTGCGCCTATGTAGGAGAGACGATAACCGCCCTAAACAACAGCA
TCGCCCACTTTGGCACTCAAGAGCAGCAAATACAGCAAGCCGAAAACATCGCTGACACTCTAGTGAATTTCAAATCTAGA
TACAGCGAATTAGGCAACACTTATAACAGCATCACTACCGCGCTCTCCAAAGTCCCTAACGCGCAAAGCTTGCAAAATGT
GGTGAGTAAAAAGAACAACCCCTATAGCCCGCAAGGCATAGAAACCAATTACTATCTCAATCAAAACTCTTACAACCAAA
TCCAAACCATTAACCAAGAATTAGGCCGTAACCCCTTTAGGAAAGTGGGCATCGTCGGTTCTCAAACCAACAACGGCGCG
ATGAATGGGATCGGTATTCAGGTGGGCTACAAACAATTTTTTGGCCAAAAAAGAAAATGGGGCGCTAGGTATTACGGCTT
TTTTGATTACAACCATGCGTTTATTAAATCTAGCTTTTTCAACTCGGCTTCTGACGTGTGGACTTATGGTTTTGGAGCGG
ACGCTCTCTATAACTTCATCAACGATAAAGCCACCAATTTCTTAGGTAAAAACAACAAGCTTTCTTTCGGGCTTTTTGGC
GGGATTGCGTTAGCCGGCACTTCATGGCTTAACTCTGAGTATGTGAATTTAGCCACCATGAATAATGTCTATAACGCTAA
AATGAATGTGGCGAACTTCCAATTCTTATTCAACATGGGAGTGAGGATGAATTTAGCCAGATCCAAGAAAAAAGGCAGCG
ATCATGCAGCTCAGCATGGGATTGAGTTAGGGCTTAAAATCCCCACCATCAACACGAACTACTATTCCTTTATGGGGGCT
GAACTCAAATACCGCAGGCTTTATAGCGTGTATTTGAATTATGTGTTCGCTTACTAG

Upstream 100 bases:

>100_bases
AAAAATCTTATCAATCCATGCTATATTAACGAAATCTTGTGATAAGATCTTATTCTTTTAAAAGACTTACATAACCATTT
TAATTTCAAGGAGAAAATTT

Downstream 100 bases:

>100_bases
AAGCTCACATTAAACCCCTTTTGTGGAACTCCCTTTTTTTGGGGGTTTTAAATTCTCTTTTTTAAAGCCTTTCTTTTTTT
GAACCCTTTTTTTTGAACTC

Product: outer membrane protein HopU

Products: NA

Alternate protein names: Outer Membrane Protein HorA; Outer Membrane Protein HopQ; Outer Membrane Protein HopZ; Outer Membrane Protein(Omp4) HopW Protein SabB; Outer Membrane Protein/Porin; Outer Membrane Protein HopW Protein (; Outer Membrane Protein HorC; Outer Membrane Protein HorJ; Outer Membrane Protein SabB/HopO; Outer Membrane Protein HopA; Outer Membrane Protein BabA; Outer Membrane Protein HopD; Outer Membrane Protein Adhesin; Outer Membrane Protein ,Adhesin BabA BabB; Outer Membrane Protein Omp; Outer Membrane Function; Outer Membrane Protein HorK; Outer Membrane Protein HorF; Outer Membrane Protein HopB; Adhesin; Outer Membrane Protein HopE; Outer Membrane Protein HorL; Outer Membrane Protein HopL; Outer Membrane Protein HopC; Outer Membrane Protein,HopV BabB BabA; Outer Membrane Protein HorB; Outer Membrane Protein HopF; Outer Membrane Protein HopG

Number of amino acids: Translated: 738; Mature: 738

Protein sequence:

>738_residues
MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQDLSDNYEKLNNLLTRYSTLNTLIKLSADPSAVSG
AINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIGYAVMCGNGNGTGSGPGSVVFDGEPGQGSTQITCNRYESTG
PGKSMSIDEFKKLNEAYQIIQQALKNQNGFPELGGQGTTVNVHYEYECKQTADINGGVNQFCQAKNGSSSSGSSGSNGTS
TQTTTQDGVTIATTYNNNKATVDFSITNNAQQLLNQAANIMQVLNTQCPLVRSTGNESAAGGGQPWGLSTSGNACQIFQQ
EFSAVTSMIKNAQEIVAQSKIANANQQAEITNPSNFNPFTDAGFAQDMLKNAKAQAEMFNLAEQVRKNLEVMENNNNVNA
ELSGFGKEMTNFVSAFLATCKKDGTLPNAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIQQAENIADTLVNFKSR
YSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVGSQTNNGA
MNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSFGLFG
GIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA
ELKYRRLYSVYLNYVFAY

Sequences:

>Translated_738_residues
MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQDLSDNYEKLNNLLTRYSTLNTLIKLSADPSAVSG
AINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIGYAVMCGNGNGTGSGPGSVVFDGEPGQGSTQITCNRYESTG
PGKSMSIDEFKKLNEAYQIIQQALKNQNGFPELGGQGTTVNVHYEYECKQTADINGGVNQFCQAKNGSSSSGSSGSNGTS
TQTTTQDGVTIATTYNNNKATVDFSITNNAQQLLNQAANIMQVLNTQCPLVRSTGNESAAGGGQPWGLSTSGNACQIFQQ
EFSAVTSMIKNAQEIVAQSKIANANQQAEITNPSNFNPFTDAGFAQDMLKNAKAQAEMFNLAEQVRKNLEVMENNNNVNA
ELSGFGKEMTNFVSAFLATCKKDGTLPNAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIQQAENIADTLVNFKSR
YSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVGSQTNNGA
MNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSFGLFG
GIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA
ELKYRRLYSVYLNYVFAY
>Mature_738_residues
MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQDLSDNYEKLNNLLTRYSTLNTLIKLSADPSAVSG
AINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIGYAVMCGNGNGTGSGPGSVVFDGEPGQGSTQITCNRYESTG
PGKSMSIDEFKKLNEAYQIIQQALKNQNGFPELGGQGTTVNVHYEYECKQTADINGGVNQFCQAKNGSSSSGSSGSNGTS
TQTTTQDGVTIATTYNNNKATVDFSITNNAQQLLNQAANIMQVLNTQCPLVRSTGNESAAGGGQPWGLSTSGNACQIFQQ
EFSAVTSMIKNAQEIVAQSKIANANQQAEITNPSNFNPFTDAGFAQDMLKNAKAQAEMFNLAEQVRKNLEVMENNNNVNA
ELSGFGKEMTNFVSAFLATCKKDGTLPNAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIQQAENIADTLVNFKSR
YSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVGSQTNNGA
MNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSFGLFG
GIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA
ELKYRRLYSVYLNYVFAY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80017; Mature: 80017

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQDLSDNYEKLNNLLT
CCCEEEEEEECEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RYSTLNTLIKLSADPSAVSGAINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIG
HHHHHHHHEEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
YAVMCGNGNGTGSGPGSVVFDGEPGQGSTQITCNRYESTGPGKSMSIDEFKKLNEAYQII
EEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
QQALKNQNGFPELGGQGTTVNVHYEYECKQTADINGGVNQFCQAKNGSSSSGSSGSNGTS
HHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
TQTTTQDGVTIATTYNNNKATVDFSITNNAQQLLNQAANIMQVLNTQCPLVRSTGNESAA
CCEECCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
GGGQPWGLSTSGNACQIFQQEFSAVTSMIKNAQEIVAQSKIANANQQAEITNPSNFNPFT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
DAGFAQDMLKNAKAQAEMFNLAEQVRKNLEVMENNNNVNAELSGFGKEMTNFVSAFLATC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHH
KKDGTLPNAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIQQAENIADTLVNFKSR
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQE
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LGRNPFRKVGIVGSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFF
HCCCCCHHCCEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCEEEEEECCCHHHHHHHHC
NSASDVWTYGFGADALYNFINDKATNFLGKNNKLSFGLFGGIALAGTSWLNSEYVNLATM
CCCCHHEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCHHCCCCCEEEEEE
NNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA
CCHHCCEECHHHEEEEECCCCEEEHHHHCCCCCHHHHHCCCEEEEEECEECCCHHHHHCC
ELKYRRLYSVYLNYVFAY
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKTLLLSLSLSLSFLLHAEDDGFYTSVGYQIGEAAQMVKNTKGIQDLSDNYEKLNNLLT
CCCEEEEEEECEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RYSTLNTLIKLSADPSAVSGAINNLNAGATGLLKEKTNSPAYQAVSLALNAAVGLWNTIG
HHHHHHHHEEECCCCHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
YAVMCGNGNGTGSGPGSVVFDGEPGQGSTQITCNRYESTGPGKSMSIDEFKKLNEAYQII
EEEEECCCCCCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
QQALKNQNGFPELGGQGTTVNVHYEYECKQTADINGGVNQFCQAKNGSSSSGSSGSNGTS
HHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
TQTTTQDGVTIATTYNNNKATVDFSITNNAQQLLNQAANIMQVLNTQCPLVRSTGNESAA
CCEECCCCEEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCC
GGGQPWGLSTSGNACQIFQQEFSAVTSMIKNAQEIVAQSKIANANQQAEITNPSNFNPFT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC
DAGFAQDMLKNAKAQAEMFNLAEQVRKNLEVMENNNNVNAELSGFGKEMTNFVSAFLATC
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHH
KKDGTLPNAGVTSNTWGAGCAYVGETITALNNSIAHFGTQEQQIQQAENIADTLVNFKSR
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQE
HHHHCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
LGRNPFRKVGIVGSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFF
HCCCCCHHCCEEECCCCCCCCCCEEEEECHHHHCCCCCCCCCEEEEEECCCHHHHHHHHC
NSASDVWTYGFGADALYNFINDKATNFLGKNNKLSFGLFGGIALAGTSWLNSEYVNLATM
CCCCHHEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHCCHHCCCCCEEEEEE
NNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA
CCHHCCEECHHHEEEEECCCCEEEHHHHCCCCCHHHHHCCCEEEEEECEECCCHHHHHCC
ELKYRRLYSVYLNYVFAY
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA