BacMap

Definition	Helicobacter pylori HPAG1 chromosome, complete genome.
Accession	NC_008086
Length	1,596,366

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The map label for this gene is yhcG [H]

Identifier: 108563587

GI number: 108563587

Start: 1227855

End: 1228541

Strand: Reverse

Name: yhcG [H]

Synonym: HPAG1_1162

Alternate gene names: 108563587

Gene position: 1228541-1227855 (Counterclockwise)

Preceding gene: 108563588

Following gene: 108563586

Centisome position: 76.96

GC content: 38.14

Gene sequence:

>687_bases
ATGCTAGTAGAAATAGAGAATTTGACTAAAACCTATGGGAGTTTAAAAGCGTTAGACAATATCAATTTGAAACTACCCAA
ACAGCAATTTATAGGGCTTTTAGGCCCTAATGGGGCGGGCAAAACCACTCTGTTAAAGATTTTAGCTGGATTGAATTTGA
ACTATCAAGGGGAAGTGAAAATTTTAAATCAAAAGATCGGCATAGAAACTAAAAAAAGCGTGGCGTTTTTAAGCGATGGC
GATTTTTTAGATCCTAAATTAACGCCTTTAAAAGCGATCGCTTTTTACAAGGATTTTTTCAGCGATTTTGATTCATCAAA
AGCCCTAGATTTACTCAAACGCTTCAGCGTGCCTTTAAAAAGAGAGTTTAAAGCCCTTTCAAAAGGCATGAGGGAAAAAT
TACAGCTGATCTTAACCCTATCACGAAACGCTTCTTTGTATCTTTTTGATGAGCCGGTGGCTGGGATTGACCCTATTGCA
AGAGAAGAGATTTTTGAACTCATCGCTAAGGAATTTAGCCAAAACGCAAGCTTGTTAGTCTCTACGCATTTGGTGGTGGA
TGTGGAAAAGTATTTAGACAGCGCGATTTTTTTAAAAGAAGCTAAAGTGGTGGCTTTTGGGGGTGTGGGAGAATTGAAAA
AAGGGTATAGCAGTTTGGAAGCGGCGTATAAAGAAAGGTTGAAATAG

Upstream 100 bases:

>100_bases
TGTTTTTCACGCCGATTTTATGGCCTGATTTCACCCCTAAAGATTTAGAAAATATCATTAGCGATTTTTATAAAAGAGTG
CGCAAATTCGGGGAATTAAA

Downstream 100 bases:

>100_bases
ATCAGTAAAGGATTTCCTATTGAGTGATAATATTTTAAGAAATACTAAAAGCGTTTTTTATAATAATATAAAAGATTTTG
ACGCTAGTTAAATGATAACT

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYSSLEAAYKERLK

Sequences:

>Translated_228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYSSLEAAYKERLK
>Mature_228_residues
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDG
DFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIA
REEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYSSLEAAYKERLK

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=225, Percent_Identity=29.7777777777778, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI30795238, Length=225, Percent_Identity=29.7777777777778, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=29.2035398230088, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=29.2035398230088, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI21536376, Length=216, Percent_Identity=30.0925925925926, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI27477115, Length=207, Percent_Identity=28.5024154589372, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI153792144, Length=229, Percent_Identity=27.9475982532751, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=26.5700483091787, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI105990541, Length=191, Percent_Identity=29.3193717277487, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI116734710, Length=229, Percent_Identity=26.6375545851528, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI27436953, Length=207, Percent_Identity=25.6038647342995, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI27262624, Length=217, Percent_Identity=26.2672811059908, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI27262626, Length=217, Percent_Identity=26.2672811059908, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI150417984, Length=220, Percent_Identity=30, Blast_Score=67, Evalue=9e-12,
Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=28.448275862069, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI87081782, Length=221, Percent_Identity=24.8868778280543, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1790739, Length=220, Percent_Identity=23.6363636363636, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=24.6575342465753, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786563, Length=218, Percent_Identity=28.4403669724771, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789672, Length=215, Percent_Identity=26.046511627907, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789593, Length=217, Percent_Identity=23.963133640553, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790162, Length=242, Percent_Identity=26.0330578512397, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=175, Percent_Identity=28, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=214, Percent_Identity=25.2336448598131, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=22.4770642201835, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081709, Length=231, Percent_Identity=25.1082251082251, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1790544, Length=229, Percent_Identity=23.1441048034935, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787089, Length=227, Percent_Identity=24.6696035242291, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI48995001, Length=229, Percent_Identity=25.3275109170306, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=26.8398268398268, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081791, Length=177, Percent_Identity=28.8135593220339, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=212, Percent_Identity=25, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=214, Percent_Identity=24.2990654205607, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081834, Length=232, Percent_Identity=25.4310344827586, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787164, Length=203, Percent_Identity=25.1231527093596, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786698, Length=193, Percent_Identity=29.0155440414508, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787712, Length=189, Percent_Identity=24.8677248677249, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788472, Length=231, Percent_Identity=22.5108225108225, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=169, Percent_Identity=28.4023668639053, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983516, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983510, Length=233, Percent_Identity=29.6137339055794, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565586, Length=236, Percent_Identity=26.6949152542373, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=192, Percent_Identity=31.25, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=233, Percent_Identity=28.3261802575107, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221512771, Length=225, Percent_Identity=27.5555555555556, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=28.0373831775701, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=28.0373831775701, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28574150, Length=201, Percent_Identity=26.865671641791, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI116007328, Length=201, Percent_Identity=26.865671641791, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24650855, Length=202, Percent_Identity=27.2277227722772, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24650853, Length=202, Percent_Identity=27.2277227722772, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281362751, Length=207, Percent_Identity=27.0531400966184, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI28573571, Length=225, Percent_Identity=24, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24582014, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582012, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=219, Percent_Identity=24.2009132420091, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI85725262, Length=198, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648314, Length=228, Percent_Identity=22.8070175438596, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643674, Length=223, Percent_Identity=23.7668161434978, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25352; Mature: 25352

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVK
CEEEEHHHHHHHHHHHHHCCCCEEECHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCEE
ILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLK
EEEHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
REFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLV
HHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
STHLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYSSLEAAYKERLK
HHHHHEEHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLVEIENLTKTYGSLKALDNINLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVK
CEEEEHHHHHHHHHHHHHCCCCEEECHHHHCEEECCCCCCHHHHHHHHHCCCCCCCCCEE
ILNQKIGIETKKSVAFLSDGDFLDPKLTPLKAIAFYKDFFSDFDSSKALDLLKRFSVPLK
EEEHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH
REFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLV
HHHHHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
STHLVVDVEKYLDSAIFLKEAKVVAFGGVGELKKGYSSLEAAYKERLK
HHHHHEEHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]