Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is glnH [H]
Identifier: 108563536
GI number: 108563536
Start: 1169587
End: 1170420
Strand: Direct
Name: glnH [H]
Synonym: HPAG1_1111
Alternate gene names: 108563536
Gene position: 1169587-1170420 (Clockwise)
Preceding gene: 108563535
Following gene: 108563537
Centisome position: 73.27
GC content: 37.53
Gene sequence:
>834_bases ATGAAAACGAACGGGCTTTTTAAGGTATGGGGGCTATTTTTAGTTTTAATCGCTTTAGTCTTTAATGCATGCTCTGATAG CCATAAAGAAAAAAAGGACGCTTTAGAAGTTATTAAACAAAGAGGGGTTTTAAAAGTGGGGGTTTTTAGCGATAAGCCTC CTTTTGGCTCTGTGGATTCTAAAGGGAAATATCAAGGCTATGATGTAGTCATTGCTAAACGCATGGCCCTTGATTTATTG GGCGATGAAAATAAGATTGAGTTTATCCCTGTAGAAGCCTCAGCTAGGGTGGAATTTTTAAAAGCCAATAAAGTGGATAT TATCATGGCTAATTTCACGCGCACCAAAGAAAGAGAAAAAGTCGTGGATTTCGCTAAGCCGTATATGAAAGTCGCTTTAG GGGTGGTTTCTAAAGATGGGGTCATTAAAAATATAGAAGAGTTGAAAGATAAAGAGTTGATTGTGAATAAAGGCACGACA GCGGATTTTTATTTCACTAAAAATTACCCCAATATCAAACTTTTGAAATTTGAGCAAAACACAGAGACTTTTTTAGCCCT TTTAAACAATAAGGCTATCGCTCTAGCCCATGACAACACTTTATTGCTCGCTTGGACGAAACAGCACCCTGAGTTTAAAT TAGGCATTACAAGCCTTGGCGATAAGGATGTGATCGCTCCAGCGATTAAAAAAGGCAACCCTAAGCTTTTAGAATGGCTG AATAACGAAATTGATTCCCTCATTTCTAGCGACTTCTTAAAAGAAGCTTACAAGGAAACTTTAGAGCCTGTTTATGGCGA TGAAATCAAACCGGAAGAAATTATTTTTGAATGA
Upstream 100 bases:
>100_bases TCAAAGAGCGCAAAAATTTTTAGAAACTTTCCATTTTTTAGGGAGCTGTTAAATAAAGTTTGCTAAAAAGATGGTTTTAA TTTCAAAAAAAGGTGTTTTT
Downstream 100 bases:
>100_bases TTTCTTTAGGCTTTGATTTCTTGACAGAGCGCGTTTTTGTTGCTAAATTAGCAATTTTGTGATCTTTTTGTTTTTCATTT TGAGATATATTTGTTTGACT
Product: glutamine ABC transporter, periplasmic glutamine-binding protein
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: GlnBP [H]
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MKTNGLFKVWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGKYQGYDVVIAKRMALDLL GDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFAKPYMKVALGVVSKDGVIKNIEELKDKELIVNKGTT ADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWTKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWL NNEIDSLISSDFLKEAYKETLEPVYGDEIKPEEIIFE
Sequences:
>Translated_277_residues MKTNGLFKVWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGKYQGYDVVIAKRMALDLL GDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFAKPYMKVALGVVSKDGVIKNIEELKDKELIVNKGTT ADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWTKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWL NNEIDSLISSDFLKEAYKETLEPVYGDEIKPEEIIFE >Mature_277_residues MKTNGLFKVWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGKYQGYDVVIAKRMALDLL GDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREKVVDFAKPYMKVALGVVSKDGVIKNIEELKDKELIVNKGTT ADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWTKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWL NNEIDSLISSDFLKEAYKETLEPVYGDEIKPEEIIFE
Specific function: Involved in glutamine-transport system. Interacts with the glutamine-transport system glnPQ [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=208, Percent_Identity=24.5192307692308, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787088, Length=199, Percent_Identity=25.6281407035176, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788228, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787031, Length=205, Percent_Identity=29.7560975609756, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786876, Length=178, Percent_Identity=25.8426966292135, Blast_Score=61, Evalue=8e-11,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 31260; Mature: 31260
Theoretical pI: Translated: 7.58; Mature: 7.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNGLFKVWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDS CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC KGKYQGYDVVIAKRMALDLLGDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREK CCCCCCCCEEHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCHHHHH VVDFAKPYMKVALGVVSKDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQN HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEEEECCC TETFLALLNNKAIALAHDNTLLLAWTKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWL HHHHHHHHCCCEEEEEECCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHH NNEIDSLISSDFLKEAYKETLEPVYGDEIKPEEIIFE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC >Mature Secondary Structure MKTNGLFKVWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDS CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC KGKYQGYDVVIAKRMALDLLGDENKIEFIPVEASARVEFLKANKVDIIMANFTRTKEREK CCCCCCCCEEHHHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCHHHHH VVDFAKPYMKVALGVVSKDGVIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQN HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCEEEEEECCCCCEEEEEECCC TETFLALLNNKAIALAHDNTLLLAWTKQHPEFKLGITSLGDKDVIAPAIKKGNPKLLEWL HHHHHHHHCCCEEEEEECCEEEEEEECCCCCEEEEEECCCCCCHHHHHHHCCCHHHHHHH NNEIDSLISSDFLKEAYKETLEPVYGDEIKPEEIIFE HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1856180 [H]