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The map label for this gene is yohD [H]

Identifier: 108563526

GI number: 108563526

Start: 1158413

End: 1158994

Strand: Reverse

Name: yohD [H]

Synonym: HPAG1_1101

Alternate gene names: 108563526

Gene position: 1158994-1158413 (Counterclockwise)

Preceding gene: 108563529

Following gene: 108563525

Centisome position: 72.6

GC content: 37.97

Gene sequence:

>582_bases
ATGCAAGAAGCGTTGTTGCGTTTTCAAGAGGGTTTTAAGGAGTGGGGTTATCTTATTTTATTTTTATATTCTTTAGGGGG
CGGGTATGTGGGGATTGTCATCGCTTCCATTTTGAGCACTACCACGCACGCTTTGGATATAAAAATAACCATTCTTGTCG
CTTTTTTAGGGAATATGGTAGGGAGTGGGGCTCTTGTAGTCTTTGCCCGCTATCAAAAAAGAGAGTTTTTAAAGTATTTC
CAAAAGCATAGAAGAAAGCTTGCTTTAGCGAGTTTGTGGGTGAAACGCTACGCCTTGCTCATGATTTTTGTCAATAAATA
TCTCTATGGGATTAAAAGCGTTGTGCCTTTGGCGGTTGGTTTTAGCAAATACCCTTTAAAAAGATTTTTATGGCTTAATG
TTTTTTCCAGTTTTTTGTGGGCGTTAATCGTGGGGAGCGTTTCTTTTCAAGCGAGCGATTGGGTGAAAACGCTGTATGAA
AGGCTTTCTCATTACACTTCGTTTTTTGTCATAAGTTTTGTTCTTATAGCACTTTTAATATGGTTTTTATTGAAACGATA
TTCGCGCAAAATGGGTTTTTAA

Upstream 100 bases:

>100_bases
GGATAATGCTGTCATTATACTAAAAGATAGTATTTAAATCACCAATAGGTTGAATAAGTTTGGATAACATGAAAATGAGA
AAATTAAAAAGAGGGTTTGA

Downstream 100 bases:

>100_bases
GCAAGATGTTTAATTAAATGCGCTAAACTACGCCCACAAGCACTCGCTAAAAGCGGGTGCGTTAATATCTTTAAACACAA
GGATTGAGAACATGGGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MQEALLRFQEGFKEWGYLILFLYSLGGGYVGIVIASILSTTTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
QKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKRFLWLNVFSSFLWALIVGSVSFQASDWVKTLYE
RLSHYTSFFVISFVLIALLIWFLLKRYSRKMGF

Sequences:

>Translated_193_residues
MQEALLRFQEGFKEWGYLILFLYSLGGGYVGIVIASILSTTTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
QKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKRFLWLNVFSSFLWALIVGSVSFQASDWVKTLYE
RLSHYTSFFVISFVLIALLIWFLLKRYSRKMGF
>Mature_193_residues
MQEALLRFQEGFKEWGYLILFLYSLGGGYVGIVIASILSTTTHALDIKITILVAFLGNMVGSGALVVFARYQKREFLKYF
QKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVGFSKYPLKRFLWLNVFSSFLWALIVGSVSFQASDWVKTLYE
RLSHYTSFFVISFVLIALLIWFLLKRYSRKMGF

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=155, Percent_Identity=27.0967741935484, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22418; Mature: 22418

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEALLRFQEGFKEWGYLILFLYSLGGGYVGIVIASILSTTTHALDIKITILVAFLGNMV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGALVVFARYQKREFLKYFQKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKRFLWLNVFSSFLWALIVGSVSFQASDWVKTLYERLSHYTSFFVISFVLIALLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFLLKRYSRKMGF
HHHHHHHHHHCCC
>Mature Secondary Structure
MQEALLRFQEGFKEWGYLILFLYSLGGGYVGIVIASILSTTTHALDIKITILVAFLGNMV
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GSGALVVFARYQKREFLKYFQKHRRKLALASLWVKRYALLMIFVNKYLYGIKSVVPLAVG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FSKYPLKRFLWLNVFSSFLWALIVGSVSFQASDWVKTLYERLSHYTSFFVISFVLIALLI
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFLLKRYSRKMGF
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]