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The map label for this gene is ybeY [C]

Identifier: 108563524

GI number: 108563524

Start: 1157351

End: 1157773

Strand: Reverse

Name: ybeY [C]

Synonym: HPAG1_1099

Alternate gene names: 108563524

Gene position: 1157773-1157351 (Counterclockwise)

Preceding gene: 108563525

Following gene: 108563517

Centisome position: 72.53

GC content: 41.84

Gene sequence:

>423_bases
ATGCTAGAAATAGACAACCAAACCCCGCTAGAATCAGACTTTTTATTATTAGAAAAAATCGCAAATGTTTTAGCCCCCAC
TCAAATCATTGAGCTTGTTTTAGTGAGCGATGAAACCATGCGAGAAATCAACAGGGATTTAAGGGGTTGCGATTACGCTA
CCGATGTTTTGAGTTTCCCTTTAGAAGCAATCCCTCACACCCCTTTAGGGAGCGTGGTGATTAATGCGCCATTAGCTCAA
ACTAACGCCCTGAAATTAGGGCATAGCTTAGAAAATGAGATCGCTCTTTTATTCATTCATGGGGTGTTGCACTTGTTGGG
CTATGACCATGAAAAAGATAAGGGCGAACAACGCCAAAAAGAGAGCGAACTCATTAAAGCGTTTAACTTGCCTTTGAGTT
TGATTGAACGCGCACAGGATTAG

Upstream 100 bases:

>100_bases
AGAGGATTTCAAAATGGGTAGAACAAGTTAAAGGTTCTTTCGCTTAATCTTTATAAGCCCTAAATTTTAGGGCTTTTTTA
AACTTCTTTTTATATCTTTA

Downstream 100 bases:

>100_bases
GTTTAGATACTCTACTAATGCTGACAAATAAAGCTTTTAATTTCTTTTAAAATGGGGCTTTAATTATTTTGTCTTATATT
TTAAATTTTATTTTATAGTA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQ
TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKAFNLPLSLIERAQD

Sequences:

>Translated_140_residues
MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQ
TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKAFNLPLSLIERAQD
>Mature_140_residues
MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQ
TNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQKESELIKAFNLPLSLIERAQD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 15662; Mature: 15662

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVLSFP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCC
LEAIPHTPLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQK
HHHCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKAFNLPLSLIERAQD
HHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MLEIDNQTPLESDFLLLEKIANVLAPTQIIELVLVSDETMREINRDLRGCDYATDVLSFP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCC
LEAIPHTPLGSVVINAPLAQTNALKLGHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQK
HHHCCCCCCCCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ESELIKAFNLPLSLIERAQD
HHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA