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The map label for this gene is rimM [H]

Identifier: 108563513

GI number: 108563513

Start: 1143016

End: 1143570

Strand: Reverse

Name: rimM [H]

Synonym: HPAG1_1088

Alternate gene names: 108563513

Gene position: 1143570-1143016 (Counterclockwise)

Preceding gene: 108563514

Following gene: 108563512

Centisome position: 71.64

GC content: 37.48

Gene sequence:

>555_bases
ATGGTTTCTATGCTTTTAGTGGGCAGAATTGGTAAAAGCGTGGGGCTTAATGGGGGGTTAAAGCTTCATTTAGAGAGCGA
TTTTCCAGAGTGCTTAAAAAAAGGCGTTAAGGTGAGTGTCGCTCCAATCAACGCTTTCTCTCGCGCTTCTTCTTTTAAAG
ACTATGTAATCCATTCCTATGAACATGCTAAAAACCTATTATTTTTAGAAACGATCCACACGCCCGAAAAGGCTAAAGAG
CTGACTAATTTAGGGCTTTTTATGAGCGAAGCAGAGAGCAAGAAACTCTGTGTTTTAAAAGAGGGGGAGTTTTTTTATTG
CGATTTAGTAGGGCTTAGCGTGGTGGAAGAAAACGAGTTTTTGGGGAAAGTCATAGAAATCCAAAGGATTTCTCAAATAG
ATTATTTTCTGGTTGAAACCACGAAAAGTTTGGTTGAAAAAGGTTTGGCTAAGATTTTTTTAATCCCTTATAGGGATTTT
TATATCCAAGAAATCCTTTTGCAAGACAAAAAAATAACCACCCATAACGCTAAAACGCTTTTAGAGAATAGTTGA

Upstream 100 bases:

>100_bases
GAGCGCGATTAAGGCGTTTGTTTCTGGTGTGAAAGCCAAAGACGGGTTTTCTTATAAAATCGTTGTTTTTGCCAGTAAAA
ATAGCGATCAAACGCCTTGA

Downstream 100 bases:

>100_bases
GTGAAATTCAGCGTTTTGACCCTTTTCCCGCAACTTGTATGGCCTTATTTTGAAGATTCTATTTTAAAAAGAGCGTTAGA
AAAAAATCTTTTTGAATTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MVSMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEFLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS

Sequences:

>Translated_184_residues
MVSMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEFLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS
>Mature_184_residues
MVSMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSYEHAKNLLFLETIHTPEKAKE
LTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEFLGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDF
YIQEILLQDKKITTHNAKTLLENS

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20805; Mature: 20805

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSY
CCEEEEEHHCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEEECCHHHHHCCHHHHHHHHH
EHAKNLLFLETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEF
HHHCCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEECCCEEEEEEECCEEEECHHH
LGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHCCCCCCCCCHHHH
LENS
CCCC
>Mature Secondary Structure
MVSMLLVGRIGKSVGLNGGLKLHLESDFPECLKKGVKVSVAPINAFSRASSFKDYVIHSY
CCEEEEEHHCCHHCCCCCCEEEEECCCCHHHHHCCCEEEEEECCHHHHHCCHHHHHHHHH
EHAKNLLFLETIHTPEKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLVGLSVVEENEF
HHHCCEEEEEECCCCHHHHHHHHHHHHEECCCCCCEEEEECCCEEEEEEECCEEEECHHH
LGKVIEIQRISQIDYFLVETTKSLVEKGLAKIFLIPYRDFYIQEILLQDKKITTHNAKTL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEEECHHHHHHHHHHCCCCCCCCCHHHH
LENS
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA