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The map label for this gene is yfbE [C]

Identifier: 108563453

GI number: 108563453

Start: 1081667

End: 1082803

Strand: Direct

Name: yfbE [C]

Synonym: HPAG1_1028

Alternate gene names: 108563453

Gene position: 1081667-1082803 (Clockwise)

Preceding gene: 108563452

Following gene: 108563454

Centisome position: 67.76

GC content: 38.08

Gene sequence:

>1137_bases
TTGAAAGAGTTTGCTTATAGCGAGCCTTGTTTAGATGAAGAAGATAAAAAGGCTGTTTTAGAGGTTTTAAATTCCAAACA
GCTCACGCAAGGCAAACGCTCTCTGTTATTTGAAGAAGCTTTGTGCGAGTTTTTGGGCGTTAAGCATGCGTTAGTGTTTA
ACAGTGCGACTTCAGCCCTTTTAACGCTCTATAGGAATTTTAGCGATTTTAACGCTGATTGTAATGAAATAATCACCACC
CCTATAAGCTTTGTAGCGACGGCTAACATGCTTTTAGAAAGTGGTTACAAACCCGTATTTGCTGGAATTAAAAACGATGG
CAATATAGATGAATTGGCCCTAGAAAAGCTCATTAACGAAAAAACCAAAGCCATAGTGAGCGTGGATTATGCCGGTAAAA
GCGTAGAAGCAAAAAGTATTCAAGAGCTTTGCAAAAAGCATTCTTTGAGTTTTCTTTCTGACAGCTCGCATGCTCTAGGG
AGTGAGTATCAAAGCAAAAAAGTAGGAAGCTTTGCGTTAGCGAGCGTGTTTAGTTTCCATGCCATTAAGCCCATCACTAC
GGCTGAAGGGGGAGCGGTCGTTACTAACGATAGCGAATTGTATGAAAAAATGAAATTGTTTCGCTCTCATGGTATGCTCA
AAAAAGATTTTTTTGAAGGCGAAGTCAAAAGCATAGGGCATAACTTCCGTTTGAATGAAATCCAAAGCGCTTTGGGTTTG
AGCCAGCTTAAAAAAGCCCCCTTTTTAATGCAAAAAAGAGAAGAAGCCGCTCTAGTTTATGACAGGATTTTTAAAGATAA
CCCTTATTTCACCCCTTTACACCCCTTGTTAAAATACAAAAGCTCTAACCACCTTTATCCTATTTTAATGCGCCAAAAAT
TTTTTACATGCAAAAAACTCATTTTAGAAAATTTGCACAAGCGTGGCATTTTAGCCCAAGTGCATTACAAGCCCATTTAC
CAATACCAATTGTACCAACAGCTCTTTAACACAGCCCCATTAAAAAGTGCAGAAGATTTTTATAACGCTGAAATTTCCTT
GCCTTGTCATGCGAATTTAAATTTAGAGAGCGTTCAAAACATCGCTCATGGCGTTTTAAAAACTTTTGAAGGTTTTAATA
GAATAAGTTCCATTTAG

Upstream 100 bases:

>100_bases
AATATAACACCTTAGATAAAACGAGGCTGAACGCTCAAAAATTCCAAGATGTCCATGACACAAGCAAGATCACCCCATCT
CGATTGCAAGACTTGCTCGC

Downstream 100 bases:

>100_bases
GGCTTCAAGTTTTAATCACTAAGAATGGTGCGGAAGAAAGGAATCGAACCTTCATGCCTTGCGGCGCTAGATCCTAAGTC
TAGTGCGTCTACCAATTTCG

Product: spore coat polysaccharide biosynthesis protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MKEFAYSEPCLDEEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSDFNADCNEIITT
PISFVATANMLLESGYKPVFAGIKNDGNIDELALEKLINEKTKAIVSVDYAGKSVEAKSIQELCKKHSLSFLSDSSHALG
SEYQSKKVGSFALASVFSFHAIKPITTAEGGAVVTNDSELYEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGL
SQLKKAPFLMQKREEAALVYDRIFKDNPYFTPLHPLLKYKSSNHLYPILMRQKFFTCKKLILENLHKRGILAQVHYKPIY
QYQLYQQLFNTAPLKSAEDFYNAEISLPCHANLNLESVQNIAHGVLKTFEGFNRISSI

Sequences:

>Translated_378_residues
MKEFAYSEPCLDEEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSDFNADCNEIITT
PISFVATANMLLESGYKPVFAGIKNDGNIDELALEKLINEKTKAIVSVDYAGKSVEAKSIQELCKKHSLSFLSDSSHALG
SEYQSKKVGSFALASVFSFHAIKPITTAEGGAVVTNDSELYEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGL
SQLKKAPFLMQKREEAALVYDRIFKDNPYFTPLHPLLKYKSSNHLYPILMRQKFFTCKKLILENLHKRGILAQVHYKPIY
QYQLYQQLFNTAPLKSAEDFYNAEISLPCHANLNLESVQNIAHGVLKTFEGFNRISSI
>Mature_378_residues
MKEFAYSEPCLDEEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSDFNADCNEIITT
PISFVATANMLLESGYKPVFAGIKNDGNIDELALEKLINEKTKAIVSVDYAGKSVEAKSIQELCKKHSLSFLSDSSHALG
SEYQSKKVGSFALASVFSFHAIKPITTAEGGAVVTNDSELYEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGL
SQLKKAPFLMQKREEAALVYDRIFKDNPYFTPLHPLLKYKSSNHLYPILMRQKFFTCKKLILENLHKRGILAQVHYKPIY
QYQLYQQLFNTAPLKSAEDFYNAEISLPCHANLNLESVQNIAHGVLKTFEGFNRISSI

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=376, Percent_Identity=30.3191489361702, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI2367285, Length=265, Percent_Identity=30.9433962264151, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42684; Mature: 42684

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEFAYSEPCLDEEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSAL
CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LTLYRNFSDFNADCNEIITTPISFVATANMLLESGYKPVFAGIKNDGNIDELALEKLINE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH
KTKAIVSVDYAGKSVEAKSIQELCKKHSLSFLSDSSHALGSEYQSKKVGSFALASVFSFH
HHHHEEEEECCCCCCCHHHHHHHHHHHCHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHH
AIKPITTAEGGAVVTNDSELYEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGL
HCCCEEECCCCEEEECCHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCCCHHHHHHHHCH
SQLKKAPFLMQKREEAALVYDRIFKDNPYFTPLHPLLKYKSSNHLYPILMRQKFFTCKKL
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHH
ILENLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYNAEISLPCHANLNLESVQN
HHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCEEECCCCCCCCHHHHHH
IAHGVLKTFEGFNRISSI
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEFAYSEPCLDEEDKKAVLEVLNSKQLTQGKRSLLFEEALCEFLGVKHALVFNSATSAL
CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
LTLYRNFSDFNADCNEIITTPISFVATANMLLESGYKPVFAGIKNDGNIDELALEKLINE
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHH
KTKAIVSVDYAGKSVEAKSIQELCKKHSLSFLSDSSHALGSEYQSKKVGSFALASVFSFH
HHHHEEEEECCCCCCCHHHHHHHHHHHCHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHH
AIKPITTAEGGAVVTNDSELYEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGL
HCCCEEECCCCEEEECCHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCCCHHHHHHHHCH
SQLKKAPFLMQKREEAALVYDRIFKDNPYFTPLHPLLKYKSSNHLYPILMRQKFFTCKKL
HHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHHHHHHHHHHHH
ILENLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYNAEISLPCHANLNLESVQN
HHHHHHHCCCEEEECCCHHHHHHHHHHHHCCCCCCCHHHHCCCEEECCCCCCCCHHHHHH
IAHGVLKTFEGFNRISSI
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]