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The map label for this gene is ygaD [C]

Identifier: 108563361

GI number: 108563361

Start: 978441

End: 979097

Strand: Direct

Name: ygaD [C]

Synonym: HPAG1_0936

Alternate gene names: 108563361

Gene position: 978441-979097 (Clockwise)

Preceding gene: 108563360

Following gene: 108563379

Centisome position: 61.29

GC content: 39.57

Gene sequence:

>657_bases
ATGAAATTTAAATTTTTGAATATGGATAATGAGAGCGGTTTTATTTTGATTGAAAAGGAATTGGAGCGATTGAACCTTAC
CGCTCAAGTCAAAGAAGATGGCATTGAATTAAAAGGCGAAAATACAGAACAAGCGAGAATCTATCTTAAAACGCTTTTTA
ACTCCAATATTGTGGAATTAGACGATCATCAAAAAAGCGCAAACGCTTTAATAGAACGCTTGAAATCTTTAGGTTTAAAA
ATTGCGGTGGCTGAAAGTTGCTCTGGGGGGTTATTATCGCATGCATTCACTTCCATTAGCGGGGCTTCAGCGGTTTTTAT
GGGGGGTGTTGTGTGTTACAATGAAGAGGTTAAGCGCGAATTATTGAAGGTCAATGCCACGACTTTAAAAGTCTTTGGGG
TTTATAGCGAAGAGTGCGTGAAAGAAATGCTATTAGGCGTGTTTTTAAATTTTAAAGTGGATGTAGCGCTGGCGATCAGT
GGGGTGGCTGGCCCTAATGGAGGGAGCAAGGCTAATCCTGTAGGCACGATTTATATTGGTGCACAAAAGTTAGGATCTCA
AGCTTTAATCGATCGCTGTTTTTTTGAAGGGAACAGAGAAAACATTCAAAACAAAAGCGTAGAGCATGCCCTAAACATGC
TCGCTAGAATGCTATAA

Upstream 100 bases:

>100_bases
ATCCAAGCTTTTTTTCGCACTCAAAGCACGATTGATTTAGAAATAGAAGAAGTGGAAGAATTATGGCGCACGCTGAATTT
AGGGTTTTGAAAGGTTAAAA

Downstream 100 bases:

>100_bases
AACTACCTTAATGCGCAAACGCTACCAAATTCTTTTTGAGCGACCTTAGCGATGTAGGCGATTTCATTATCGTTAAGGTT
TTCAACGCTCGCTTTTAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MKFKFLNMDNESGFILIEKELERLNLTAQVKEDGIELKGENTEQARIYLKTLFNSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDVALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRENIQNKSVEHALNMLARML

Sequences:

>Translated_218_residues
MKFKFLNMDNESGFILIEKELERLNLTAQVKEDGIELKGENTEQARIYLKTLFNSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDVALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRENIQNKSVEHALNMLARML
>Mature_218_residues
MKFKFLNMDNESGFILIEKELERLNLTAQVKEDGIELKGENTEQARIYLKTLFNSNIVELDDHQKSANALIERLKSLGLK
IAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRELLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDVALAIS
GVAGPNGGSKANPVGTIYIGAQKLGSQALIDRCFFEGNRENIQNKSVEHALNMLARML

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=141, Percent_Identity=36.8794326241135, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787818, Length=147, Percent_Identity=29.2517006802721, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136
- InterPro:   IPR008135
- InterPro:   IPR020817
- InterPro:   IPR001453 [H]

Pfam domain/function: PF02464 CinA; PF00994 MoCF_biosynth [H]

EC number: NA

Molecular weight: Translated: 23824; Mature: 23824

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKFLNMDNESGFILIEKELERLNLTAQVKEDGIELKGENTEQARIYLKTLFNSNIVEL
CEEEEECCCCCCCEEEECCHHHHCCCEEEECCCCEEECCCCCHHHHHHEEHHHCCCCEEE
DDHQKSANALIERLKSLGLKIAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRE
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHCCEEEECHHHHHH
LLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDVALAISGVAGPNGGSKANPVGTIYIG
HHHHCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCEEEEEEE
AQKLGSQALIDRCFFEGNRENIQNKSVEHALNMLARML
HHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKFKFLNMDNESGFILIEKELERLNLTAQVKEDGIELKGENTEQARIYLKTLFNSNIVEL
CEEEEECCCCCCCEEEECCHHHHCCCEEEECCCCEEECCCCCHHHHHHEEHHHCCCCEEE
DDHQKSANALIERLKSLGLKIAVAESCSGGLLSHAFTSISGASAVFMGGVVCYNEEVKRE
CCCCHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHCCEEEECHHHHHH
LLKVNATTLKVFGVYSEECVKEMLLGVFLNFKVDVALAISGVAGPNGGSKANPVGTIYIG
HHHHCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCEEEEEEE
AQKLGSQALIDRCFFEGNRENIQNKSVEHALNMLARML
HHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA