The gene/protein map for NC_007969 is currently unavailable.
Definition Helicobacter pylori HPAG1 chromosome, complete genome.
Accession NC_008086
Length 1,596,366

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The map label for this gene is truD [H]

Identifier: 108563332

GI number: 108563332

Start: 955050

End: 956195

Strand: Direct

Name: truD [H]

Synonym: HPAG1_0907

Alternate gene names: 108563332

Gene position: 955050-956195 (Clockwise)

Preceding gene: 108563331

Following gene: 108563333

Centisome position: 59.83

GC content: 35.34

Gene sequence:

>1146_bases
ATGAATTTAAATTTTATGCCCCTATTGCATGCTTATAACCATGCGAGCATTGATTTTCATTTCAATTCTAGCGCTAGGGA
TTTTTGCGTGCATGAAGTGCCTTTGTATGAATTCAGCAACACGGGCGAACATGCCGTTATTCAAGTGAGGAAAAGCGGTT
TAAGCACTTTAGAAATGCTTCAAGTTTTTTCTCAAATTTTAGGGGTAAGAATCGCTGAATTGGGTTATGCGGGTTTGAAA
GATAAAAACGCGCTGACGACTCAATTCGTCTCACTCCCTAAAAAATACGCCCCTTTATTAGAAAAAAATACGCATAATTT
GCAAGAAAGAAACCTTAAGATCCTGTCTTTGAATTACCATCATAATAAAATCAAATTAGGGCATTTAAAGGGGAATCGCT
TTTTTATGCGTTTTAAAAAAATGACCCCCCTAAACGCTCAAAAGACTGAGCAGGTTTTAGAACAAATCGTGCAGTTTGGC
ATGCCTAATTATTTTGGCTCGCAACGCTTTGGGAAGTTCAATGACAACCACCAAGAGGGTTTAAAAATCTTACAAAATCA
AACGAAATTCGCCCATCAAAAATTAAACGCTTTTTTAATTTCAAGCTATCAAAGTTATTTGTTTAATTCGCTTTTAAGCA
AACGATTAGAAATCAGTAAAATCATTAGCGCTTTTAGCCTAAAAGAAAATTTAGAATTTTTTAAACAAAAAAATTTAAGC
GTTGATTCAAACACTCTAAAAACCCTTAAAAACCAAGCCCACCCCTTTAAAATCTTAGAAGGCGATGTGATGTGCCATTA
CCCTTATGGGAAGTTTTTTGACGCTTTAGAATTAGAAAAAGAGAGCGAAAGGTTTTTGAAAAAAGAAGTTGTGCCTACGG
GCTTATTAGACGGCAAAAAAGCTCTTTATGCAAAAAATTTGAGTTTTGAAATTGAAAAAGAATTCCGGCATAACCTTTTA
AGTAGCCATGCTAAAACGCTAGGCTCTAGGCGGTTTTTTTGGGTGTTTGCAGAAAATGTAACTTCTCAATATATCAAAGA
AAAAGCGCAATTTGAATTGGGATTTTACTTGCCTAAAGGGAGTTATGCGAGCGCGTTGCTCAAAGAAATCAAGCATGAGA
AAGGAGAAAATAATGACGAATTTTGA

Upstream 100 bases:

>100_bases
TCACTTTCACTAAAATCGCTCAAGGCGTGCCTACTGGAGTGAATTTTGAAAACATTGACTCTGTTTCGCTCTCAAGGGCG
TTTAATTCAAGGATCAAAGC

Downstream 100 bases:

>100_bases
AAAGATTATCGCGCAAAACAGACTCAAAACGAACGCGGTTTTAACCACTTATTGCGTGATTTTTGCTTTTATCGGGTTGT
TGGTGGATGCTATTAGAATC

Product: tRNA pseudouridine synthase D

Products: NA

Alternate protein names: tRNA pseudouridylate synthase D; tRNA-uridine isomerase D [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK
DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG
MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS
VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL
SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF

Sequences:

>Translated_381_residues
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK
DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG
MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS
VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL
SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>Mature_381_residues
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK
DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG
MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS
VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL
SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF

Specific function: Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs [H]

COG id: COG0585

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRUD domain [H]

Homologues:

Organism=Homo sapiens, GI148762985, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI148762961, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI148762948, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI50727002, Length=133, Percent_Identity=33.8345864661654, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1789102, Length=361, Percent_Identity=26.3157894736842, Blast_Score=121, Evalue=7e-29,
Organism=Saccharomyces cerevisiae, GI6324817, Length=188, Percent_Identity=30.3191489361702, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21355799, Length=156, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR001656
- InterPro:   IPR020119
- InterPro:   IPR011760 [H]

Pfam domain/function: PF01142 TruD [H]

EC number: NA

Molecular weight: Translated: 44184; Mature: 44184

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50984 TRUD ; PS01268 UPF0024

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
CCCCCCHHHHHCCCCEEEEEECCCCCCCEEECCCCEECCCCCCCEEEEEHHHCCHHHHHH
QVFSQILGVRIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHCCEEEEEEEEC
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGSQRFGKFNDNHQEG
CCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKK
CCHHHHHHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
ALYAKNLSFEIEKEFRHNLLSSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKG
HHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCEEEEEEECCC
SYASALLKEIKHEKGENNDEF
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML
CCCCCCHHHHHCCCCEEEEEECCCCCCCEEECCCCEECCCCCCCEEEEEHHHCCHHHHHH
QVFSQILGVRIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYH
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHCCEEEEEEEEC
HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGSQRFGKFNDNHQEG
CCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
LKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKK
CCHHHHHHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
ALYAKNLSFEIEKEFRHNLLSSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKG
HHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCEEEEEEECCC
SYASALLKEIKHEKGENNDEF
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA