Definition | Helicobacter pylori HPAG1 chromosome, complete genome. |
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Accession | NC_008086 |
Length | 1,596,366 |
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The map label for this gene is truD [H]
Identifier: 108563332
GI number: 108563332
Start: 955050
End: 956195
Strand: Direct
Name: truD [H]
Synonym: HPAG1_0907
Alternate gene names: 108563332
Gene position: 955050-956195 (Clockwise)
Preceding gene: 108563331
Following gene: 108563333
Centisome position: 59.83
GC content: 35.34
Gene sequence:
>1146_bases ATGAATTTAAATTTTATGCCCCTATTGCATGCTTATAACCATGCGAGCATTGATTTTCATTTCAATTCTAGCGCTAGGGA TTTTTGCGTGCATGAAGTGCCTTTGTATGAATTCAGCAACACGGGCGAACATGCCGTTATTCAAGTGAGGAAAAGCGGTT TAAGCACTTTAGAAATGCTTCAAGTTTTTTCTCAAATTTTAGGGGTAAGAATCGCTGAATTGGGTTATGCGGGTTTGAAA GATAAAAACGCGCTGACGACTCAATTCGTCTCACTCCCTAAAAAATACGCCCCTTTATTAGAAAAAAATACGCATAATTT GCAAGAAAGAAACCTTAAGATCCTGTCTTTGAATTACCATCATAATAAAATCAAATTAGGGCATTTAAAGGGGAATCGCT TTTTTATGCGTTTTAAAAAAATGACCCCCCTAAACGCTCAAAAGACTGAGCAGGTTTTAGAACAAATCGTGCAGTTTGGC ATGCCTAATTATTTTGGCTCGCAACGCTTTGGGAAGTTCAATGACAACCACCAAGAGGGTTTAAAAATCTTACAAAATCA AACGAAATTCGCCCATCAAAAATTAAACGCTTTTTTAATTTCAAGCTATCAAAGTTATTTGTTTAATTCGCTTTTAAGCA AACGATTAGAAATCAGTAAAATCATTAGCGCTTTTAGCCTAAAAGAAAATTTAGAATTTTTTAAACAAAAAAATTTAAGC GTTGATTCAAACACTCTAAAAACCCTTAAAAACCAAGCCCACCCCTTTAAAATCTTAGAAGGCGATGTGATGTGCCATTA CCCTTATGGGAAGTTTTTTGACGCTTTAGAATTAGAAAAAGAGAGCGAAAGGTTTTTGAAAAAAGAAGTTGTGCCTACGG GCTTATTAGACGGCAAAAAAGCTCTTTATGCAAAAAATTTGAGTTTTGAAATTGAAAAAGAATTCCGGCATAACCTTTTA AGTAGCCATGCTAAAACGCTAGGCTCTAGGCGGTTTTTTTGGGTGTTTGCAGAAAATGTAACTTCTCAATATATCAAAGA AAAAGCGCAATTTGAATTGGGATTTTACTTGCCTAAAGGGAGTTATGCGAGCGCGTTGCTCAAAGAAATCAAGCATGAGA AAGGAGAAAATAATGACGAATTTTGA
Upstream 100 bases:
>100_bases TCACTTTCACTAAAATCGCTCAAGGCGTGCCTACTGGAGTGAATTTTGAAAACATTGACTCTGTTTCGCTCTCAAGGGCG TTTAATTCAAGGATCAAAGC
Downstream 100 bases:
>100_bases AAAGATTATCGCGCAAAACAGACTCAAAACGAACGCGGTTTTAACCACTTATTGCGTGATTTTTGCTTTTATCGGGTTGT TGGTGGATGCTATTAGAATC
Product: tRNA pseudouridine synthase D
Products: NA
Alternate protein names: tRNA pseudouridylate synthase D; tRNA-uridine isomerase D [H]
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
Sequences:
>Translated_381_residues MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF >Mature_381_residues MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQVFSQILGVRIAELGYAGLK DKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFG MPNYFGSQRFGKFNDNHQEGLKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKKALYAKNLSFEIEKEFRHNLL SSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
Specific function: Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs [H]
COG id: COG0585
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 TRUD domain [H]
Homologues:
Organism=Homo sapiens, GI148762985, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI148762961, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI148762948, Length=147, Percent_Identity=31.9727891156463, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI50727002, Length=133, Percent_Identity=33.8345864661654, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI1789102, Length=361, Percent_Identity=26.3157894736842, Blast_Score=121, Evalue=7e-29, Organism=Saccharomyces cerevisiae, GI6324817, Length=188, Percent_Identity=30.3191489361702, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI21355799, Length=156, Percent_Identity=28.2051282051282, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020103 - InterPro: IPR001656 - InterPro: IPR020119 - InterPro: IPR011760 [H]
Pfam domain/function: PF01142 TruD [H]
EC number: NA
Molecular weight: Translated: 44184; Mature: 44184
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS50984 TRUD ; PS01268 UPF0024
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML CCCCCCHHHHHCCCCEEEEEECCCCCCCEEECCCCEECCCCCCCEEEEEHHHCCHHHHHH QVFSQILGVRIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYH HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHCCEEEEEEEEC HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGSQRFGKFNDNHQEG CCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH LKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKK CCHHHHHHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH ALYAKNLSFEIEKEFRHNLLSSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKG HHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCEEEEEEECCC SYASALLKEIKHEKGENNDEF HHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEML CCCCCCHHHHHCCCCEEEEEECCCCCCCEEECCCCEECCCCCCCEEEEEHHHCCHHHHHH QVFSQILGVRIAELGYAGLKDKNALTTQFVSLPKKYAPLLEKNTHNLQERNLKILSLNYH HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHCCEEEEEEEEC HNKIKLGHLKGNRFFMRFKKMTPLNAQKTEQVLEQIVQFGMPNYFGSQRFGKFNDNHQEG CCEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH LKILQNQTKFAHQKLNAFLISSYQSYLFNSLLSKRLEISKIISAFSLKENLEFFKQKNLS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VDSNTLKTLKNQAHPFKILEGDVMCHYPYGKFFDALELEKESERFLKKEVVPTGLLDGKK CCHHHHHHHHCCCCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH ALYAKNLSFEIEKEFRHNLLSSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKG HHHHCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCEEEEEEECCC SYASALLKEIKHEKGENNDEF HHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA