Click here to switch to the map view.

The map label for this gene is opuCC [H]

Identifier: 108563229

GI number: 108563229

Start: 838618

End: 840156

Strand: Direct

Name: opuCC [H]

Synonym: HPAG1_0804

Alternate gene names: 108563229

Gene position: 838618-840156 (Clockwise)

Preceding gene: 108563228

Following gene: 108563230

Centisome position: 52.53

GC content: 40.42

Gene sequence:

>1539_bases
TTGGTAAAAGAATTTCATGATCGCTTTATTTATTTTATAGACTTGATCGCGCAGCATTTTATCATTGTTGCGCTTTCTGG
TTTTCTCGTGCTGGTGTTTGGGGTTTTGATTGGGGTTTTTGTGTTTTATAACTCAAGGGCTAGGGCGTTTTTGCTCCCTG
TGGTGAATTTTCTCTACACCATCCCATCGCTGGCGTTATTTGCGTTATTCATTCCTGTGATTGGGGTAGGGTTAAAAAAC
GCGCTTTTAGTGTTGGTCTTATACGGCTTATTACCCATTGTCCATAGCACTTATAACGCTTTAAAAGAAGTGCGAGAAGA
GGTGATTAAGGCCGCTATCGGGCTAGGGTGTAACCCCAAAGAGTTGTTTTTTAGGGTGCGATTCTTGCTCGCTATCCCCC
AAATTTTGGTGGGTTTAAGGATTGCGGTGGTGATGCTAGTGGCGATGGCTGGGATCGGGGCGCTCATTGGGGCTGGAGGC
TTAGGGCAAGCGATTTTTAGAGGGCTAAACACGCAAAATACCACGCTTTTAGTGGCGGGCAGCTTGATTATTGCTCTTTT
TAGCGTTTTAGCGGATCAATTTGTGAGCGTCTTTCAGCATGAAAACGCTTTACAACGCCTATTTTCTCAAAACGCCACCA
AAAAACAAAAAAGAAGAGTTTATACTAATTTAGCGGTGTTTCTTTTTTTATTGCTAGCGAGCGCTTTATGGCTCATTCCT
AGAAACGCCATAGAAGAAAAGCCCTTAGTCGTGGCGACAAAACCTAGCAGCGAGCAGTATATTTTGGGCGAAATTTTAAG
CCTTTTGTTAGAAAAACACCATATCCCTATCAAGCGAGCGTTTGGCATTGGTGGGGGGACGATGAATATCCATCCGGCAT
TAATTAGGGGCGATTTTGATTTGTATGTGGAATATACCGGCACCGCTTGGGTGAATACGCTCAAAAACCCTTTGACGCAA
AAAGTGGATTTTGAAACGATTAAAAAGCGTTATGAGAAGGAATTCAATCTTTTGTGGGTGGGGCTTTTGGGCTTTAATAA
CACCTATTCCTTAGCGATTTCTAAAAAAGACGCTCAAAAATACGCTATTGAAACTTTCAGCGATTTAGCCCTTCATAGCC
CAAATTTTGATTTTGGAGCGGAATTTGACTTTTTTGAAAGAGAGGATGCTTTTAAGGGCTTAATGAAAACTTACCGCTTT
CATTTTAGAAGTTTGCATGAAATGGATATTAATTTGCGTTATAAAAGTTTTGAATCCCATAAGATCAACGCTTTAGATGT
CTTCACTACAGACGCTCAAATCAAAGAGCTGGATTTAAAGGTGCTTAAGGACGATAAAGGGTTTTTCCCTAATTATCAAG
CCGGTATTGTTATGAGAAAAGAAATAGTAAAAAAGTATCCTGAAGCACTAGAAATCTTAGAAAAACTGAATTCAAAATTT
AGCGATGAGGTGATGCAAGGTTTGAACTATCAGGTGGAAGTGTTGAAAAAAAGCCCCCAAATAGCCGCTAAAGAGTTTTT
AGAAAGATTAGGGTTATAG

Upstream 100 bases:

>100_bases
CAATTGATCAAAGGATTGTATGAATGGTTGCTCCATTCTATAGATGTGGCTACGCAGCATTTGGTTGCTATGGTGTTAAA
AATAAGCGTGGTAAAATAAT

Downstream 100 bases:

>100_bases
CATGAAAGAAATCGTCAAGATAGAGAATGTGTCTTTTAACTACCGCAATCGCGCTGTTTTTAAGGATTTTAATTTAAGCA
TTCAAGAAGGGGATTTTTTG

Product: osmoprotection protein

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 512; Mature: 512

Protein sequence:

>512_residues
MVKEFHDRFIYFIDLIAQHFIIVALSGFLVLVFGVLIGVFVFYNSRARAFLLPVVNFLYTIPSLALFALFIPVIGVGLKN
ALLVLVLYGLLPIVHSTYNALKEVREEVIKAAIGLGCNPKELFFRVRFLLAIPQILVGLRIAVVMLVAMAGIGALIGAGG
LGQAIFRGLNTQNTTLLVAGSLIIALFSVLADQFVSVFQHENALQRLFSQNATKKQKRRVYTNLAVFLFLLLASALWLIP
RNAIEEKPLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQ
KVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKKDAQKYAIETFSDLALHSPNFDFGAEFDFFEREDAFKGLMKTYRF
HFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVMRKEIVKKYPEALEILEKLNSKF
SDEVMQGLNYQVEVLKKSPQIAAKEFLERLGL

Sequences:

>Translated_512_residues
MVKEFHDRFIYFIDLIAQHFIIVALSGFLVLVFGVLIGVFVFYNSRARAFLLPVVNFLYTIPSLALFALFIPVIGVGLKN
ALLVLVLYGLLPIVHSTYNALKEVREEVIKAAIGLGCNPKELFFRVRFLLAIPQILVGLRIAVVMLVAMAGIGALIGAGG
LGQAIFRGLNTQNTTLLVAGSLIIALFSVLADQFVSVFQHENALQRLFSQNATKKQKRRVYTNLAVFLFLLLASALWLIP
RNAIEEKPLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQ
KVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKKDAQKYAIETFSDLALHSPNFDFGAEFDFFEREDAFKGLMKTYRF
HFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVMRKEIVKKYPEALEILEKLNSKF
SDEVMQGLNYQVEVLKKSPQIAAKEFLERLGL
>Mature_512_residues
MVKEFHDRFIYFIDLIAQHFIIVALSGFLVLVFGVLIGVFVFYNSRARAFLLPVVNFLYTIPSLALFALFIPVIGVGLKN
ALLVLVLYGLLPIVHSTYNALKEVREEVIKAAIGLGCNPKELFFRVRFLLAIPQILVGLRIAVVMLVAMAGIGALIGAGG
LGQAIFRGLNTQNTTLLVAGSLIIALFSVLADQFVSVFQHENALQRLFSQNATKKQKRRVYTNLAVFLFLLLASALWLIP
RNAIEEKPLVVATKPSSEQYILGEILSLLLEKHHIPIKRAFGIGGGTMNIHPALIRGDFDLYVEYTGTAWVNTLKNPLTQ
KVDFETIKKRYEKEFNLLWVGLLGFNNTYSLAISKKDAQKYAIETFSDLALHSPNFDFGAEFDFFEREDAFKGLMKTYRF
HFRSLHEMDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQAGIVMRKEIVKKYPEALEILEKLNSKF
SDEVMQGLNYQVEVLKKSPQIAAKEFLERLGL

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=285, Percent_Identity=25.6140350877193, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788451, Length=208, Percent_Identity=32.2115384615385, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788449, Length=185, Percent_Identity=31.8918918918919, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1789033, Length=203, Percent_Identity=24.6305418719212, Blast_Score=89, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 57903; Mature: 57903

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHCCCCEEHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure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HHHHHHCCCCEEHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]